View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-18 (Length: 1026)

Name: NF1441A-Insertion-18
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-18
NF1441A-Insertion-18
[»] chr8 (3 HSPs)
chr8 (8-441)||(30212704-30213135)
chr8 (473-680)||(30213173-30213384)
chr8 (674-934)||(30213702-30213972)
[»] chr5 (5 HSPs)
chr5 (137-214)||(17378355-17378433)
chr5 (374-433)||(19808804-19808863)
chr5 (112-214)||(17390533-17390630)
chr5 (694-784)||(19761079-19761170)
chr5 (302-351)||(19808753-19808802)
[»] chr4 (2 HSPs)
chr4 (696-777)||(8501838-8501920)
chr4 (704-776)||(43357692-43357765)
[»] chr1 (4 HSPs)
chr1 (134-198)||(26052152-26052217)
chr1 (742-775)||(12669823-12669856)
chr1 (672-720)||(12849206-12849255)
chr1 (738-775)||(43283288-43283325)
[»] chr6 (2 HSPs)
chr6 (741-776)||(20395700-20395735)
chr6 (742-784)||(15478453-15478495)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 30212704 - 30213135
Alignment:
Q  8 tttctgtgaaacaaagttagtcaagctagcaagtatnnnnnnngtgagatgtttagccatatcaacgtttcgaagtatgaattggaaaagcattaaatac 107  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30212704 tttctgtgaaacaaagttagtcaagctagcaagtatagaaaaagtgagatgtttagccatatcaacgtttcgaagtatgaattggaaaagcactaaatac 30212803  T
Q  108 ttgtgcactcaatcgaataagctagcttcatgcatgttgtttatggcaaagaaatttgtggcatagatgaagacagttataaacttttaagaaaaggatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30212804 ttgtgcactcaatcgaataagctagcttcatgcatgttgtttatggcaaagaaatttgtggcatagatgaagacagttataaacttttaagaaaaggatt 30212903  T
Q  208 gtgaaaagtacataacttaacaagttagaataatgtgatcatcacagtaatcaccaaggcattgtttatttaaagtaatatatactagctagattagcac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30212904 gtgaaaagtacataacttaacaagttagaataatgtgatcatcacagtaatcaccaaggcattgtttatttaaagtaatatatactagctagattagcac 30213003  T
Q  308 ggcttgcttgttgcatatgcaatcctcttaaaattcaaacacaagatggcgtcnnnnnnnnnnnngatgtaacacaatgttctttttatgcatattggtc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  30213004 ggcttgcttgttgcatatgcaatcctcttaaaattcaaacacaagatggcgtc--aaaaaaaaaagatgtaacacaatgttctttttatgcatattggtc 30213101  T
Q  408 ttctattaagcaaaatatatttttgggattttcc 441  Q
    ||||||||||||||||||||||||||||||||||    
T  30213102 ttctattaagcaaaatatatttttgggattttcc 30213135  T

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Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 473 - 680
Target Start/End: Original strand, 30213173 - 30213384
Alignment:
Q  473 cacatcaaagttaatgcttttaagggtgaactagaatatgttttgtacgggttgtctacaactctacaatat-----tgcnnnnnnnnggattgtgatgg 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||        ||||||||||||    
T  30213173 cacatcaaagttaatgcttttaagggtgaactagaatatgttttgtacgggttgtctacaactctacaatataatattgcttttttt-ggattgtgatgg 30213271  T
Q  568 ctaaattgaaatcgtgtattgttaatctcttggaagaaaagcatgttcttaatattttggtgatacaactcttattgagaaattattttgataaatagta 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30213272 ctaaattgaaatcgtgtattgttaatctcttggaagaaaagcatgttcttaatattttggtgatacaactcttattgagaaattattttgataaatagta 30213371  T
Q  668 tgttatttaaaca 680  Q
    | |||||| ||||    
T  30213372 ttttatttgaaca 30213384  T

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Target: chr8; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 674 - 934
Target Start/End: Original strand, 30213702 - 30213972
Alignment:
Q  674 ttaaacacgaagagagaaggagaaagagacgacacaagcaaattatacatgttcctctcac-atttgagagtagtccagtccccttgtacttccaaggaa 772  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |    
T  30213702 ttaaacacgaagagagaaggagaaagagacgacacaagcaaattatacatgttcctctcacaattcgagagtagtccagtccccttgcacttccaaggga 30213801  T
Q  773 tttttcactat-atcacgc-agactacaatttgcccaagattacaatttgctcaaacacacgttaaa--gcnnnnnnnactcaa--ccaccagtaagaga 866  Q
    ||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||  ||       ||||||   ||| ||||| |||    
T  30213802 tttttcactataatcacgcaagactacaatttgcgc-agattacaatttgctcaaacacacgttaaaaggcttcttttactcaaacacacaagtaaaaga 30213900  T
Q  867 cttctaca-tcagagt--aaccaataaataagattgggtttacccttgatatacagttara-gtgtaagaaa 934  Q
    |||||||| |||||||  ||| |||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  30213901 cttctacattcagagttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaa 30213972  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 17378355 - 17378433
Alignment:
Q  137 atgcatgttgttta-tggcaaagaaatttgtggcatagatgaagacagttataaacttttaagaaaaggattgtgaaaa 214  Q
    |||||||||||||| |||| |||||||||||||||  |||||||||| | |||||||||||||| || |||||||||||    
T  17378355 atgcatgttgtttaatggctaagaaatttgtggcactgatgaagacaatgataaacttttaagagaaagattgtgaaaa 17378433  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 19808804 - 19808863
Alignment:
Q  374 atgtaacacaatgttctttttatgcatattggtcttctattaagcaaaatatatttttgg 433  Q
    |||||||||||||||||| |||| || ||||||| | |||||| ||||||||||||||||    
T  19808804 atgtaacacaatgttcttgttatacacattggtcatatattaaacaaaatatatttttgg 19808863  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 17390533 - 17390630
Alignment:
Q  112 gcactcaatcgaataagctagcttcatgcatgttgttta-tggcaaagaaatttgtggcatagatgaagacagttataaacttttaagaaaaggattgtg 210  Q
    ||||||||||||||||||||      ||||||| ||||| |||| ||||||| ||||| |  |||||||||| | |||||||||||||| | ||||||||    
T  17390533 gcactcaatcgaataagcta------tgcatgtagtttaatggctaagaaatctgtggtactgatgaagacaatgataaacttttaagagagggattgtg 17390626  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 784
Target Start/End: Original strand, 19761079 - 19761170
Alignment:
Q  694 agaaagagacgacacaagcaaattatacatgttcctctcac-atttgagagtagtccagtccccttgtacttccaaggaatttttcactata 784  Q
    ||||||||||||||||| |||||||| |  ||| | ||||| |||||||  ||||||| |||||||| |||| ||||  |||||||||||||    
T  19761079 agaaagagacgacacaaacaaattatcctggtttccctcacaatttgaggttagtccattccccttgcactttcaagtgatttttcactata 19761170  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 19808753 - 19808802
Alignment:
Q  302 tagcacggcttgcttgttgcatatgcaatcctcttaaaattcaaacacaa 351  Q
    |||||||||||||||||||||||  ||||||||  ||| |||||||||||    
T  19808753 tagcacggcttgcttgttgcatacacaatcctcaaaaatttcaaacacaa 19808802  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 696 - 777
Target Start/End: Original strand, 8501838 - 8501920
Alignment:
Q  696 aaagagacgacacaagcaaattatacatgttcctctcacattt-gagagtagtccagtccccttgtacttccaaggaattttt 777  Q
    |||||||||||||||| |||||||||   |||||||||||    ||||||||||||| ||||||| |||||||||||||||||    
T  8501838 aaagagacgacacaagaaaattatactgattcctctcacaaaccgagagtagtccagaccccttgcacttccaaggaattttt 8501920  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 704 - 776
Target Start/End: Original strand, 43357692 - 43357765
Alignment:
Q  704 gacacaagcaaattatacatgttcctctcaca-tttgagagtagtccagtccccttgtacttccaaggaatttt 776  Q
    ||||||||||||||||||  ||||||||||||  | |||||||||||| ||  |||| |||||||| |||||||    
T  43357692 gacacaagcaaattatactagttcctctcacagatcgagagtagtccaatcaacttgcacttccaaagaatttt 43357765  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 26052217 - 26052152
Alignment:
Q  134 ttcatgcatgttgttta-tggcaaagaaatttgtggcatagatgaagacagttataaacttttaag 198  Q
    ||||||||||||||||| |||| |||||||||||||||  |||||||||| | |||||||||||||    
T  26052217 ttcatgcatgttgtttaatggctaagaaatttgtggcactgatgaagacaatgataaacttttaag 26052152  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 742 - 775
Target Start/End: Complemental strand, 12669856 - 12669823
Alignment:
Q  742 agtagtccagtccccttgtacttccaaggaattt 775  Q
    |||||||||||||||||| |||||||||||||||    
T  12669856 agtagtccagtccccttgcacttccaaggaattt 12669823  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 672 - 720
Target Start/End: Original strand, 12849206 - 12849255
Alignment:
Q  672 atttaaacacgaagagagaag-gagaaagagacgacacaagcaaattata 720  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||| ||||    
T  12849206 atttaaacacagagagagaagagagaaagagacgacacaagcaaactata 12849255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 738 - 775
Target Start/End: Complemental strand, 43283325 - 43283288
Alignment:
Q  738 tgagagtagtccagtccccttgtacttccaaggaattt 775  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  43283325 tgagagtagtctagtcctcttgtacttccaaggaattt 43283288  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 776
Target Start/End: Original strand, 20395700 - 20395735
Alignment:
Q  741 gagtagtccagtccccttgtacttccaaggaatttt 776  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20395700 gagtagtccagtccccttgcacttccaaggaatttt 20395735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 784
Target Start/End: Complemental strand, 15478495 - 15478453
Alignment:
Q  742 agtagtccagtccccttgtacttccaaggaatttttcactata 784  Q
    |||||||||||||||||| |||||||||||  |||||||||||    
T  15478495 agtagtccagtccccttgcacttccaaggagattttcactata 15478453  T

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