View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-19 (Length: 983)
Name: NF1441A-Insertion-19
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-19 |
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Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 118 - 815
Target Start/End: Original strand, 1531505 - 1532202
Alignment:
| Q |
118 |
cttggatggttgggatattcatagttgttgtgcaaaggtgggagaatttggttcaacagatgaaagatataaggaatgttgtggcaaacaagttttttag |
217 |
Q |
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| T |
1531505 |
cttggatggttgggatattcatagttgttgtgcaaaggtgggagaatttggttcaacagatgaaagatataaggaatgttgtggcaaacaagttttttag |
1531604 |
T |
|
| Q |
218 |
ccaatcaagttatgcttcttcaagaccttgaagatattcaagttttagttttctagtttatggcagcagtaataggattatgtctttatatt----tcta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1531605 |
ccaatcaagttatgcttcttcaagaccttgaagatattcaagttttagttttctagtttatggcagcagtaataggattatgtctttatattaatttcta |
1531704 |
T |
|
| Q |
314 |
atttcttatatatattaaatacagtgagttttacatttcaatatttctctactatctttcatctttgatattaacaattagagcttgtgatggctttatt |
413 |
Q |
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| T |
1531705 |
atttcttatatc----aaatacagtgagttttacctttcaatatttctttactatctttcatctttgatattaacaattagagcttgtgatggctttatt |
1531800 |
T |
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| Q |
414 |
tttagtggtaatgtgacaagtgctaacggattcacttaatttaaactttttaattataaaacttgattagatttagtagcggaattggttgatgcaaagg |
513 |
Q |
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| T |
1531801 |
tttagtggtaatgtgacaagtgctaacggattcacttaatttaaattttttaattataaaacttgattagatttagtagcggaattggttgatgcaaagg |
1531900 |
T |
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| Q |
514 |
gaaattggaataatcaaattctagattggctgcctaatgatatcagaaagaagattgactcaattctgccaccatggttgatagcatagtcacataattc |
613 |
Q |
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| T |
1531901 |
gaaattggaataatcaaattctagattggctgcctaatgatatcagaaagaagattgactcaattctgccaccatggttgatagcatagtcacataattc |
1532000 |
T |
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| Q |
614 |
gtaatttgggctgctacacggtaccagtatagatacgggtttgtggtatgcgacatgagaagaatttggtatgccagggggtatatagctaatgtactcg |
713 |
Q |
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| T |
1532001 |
gtaatttgggctgctacacggtaccagtatagatacgggtttgtggtatgcgacatgagaagaatttggtatgccagggggtatatagctaatgtactcg |
1532100 |
T |
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| Q |
714 |
tcgattcatagtgctagtactatctaattaagtatactaaagctatctagacattgcaaaaaagtagaagaattatattaacccgttgc-aaaaagtagt |
812 |
Q |
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| T |
1532101 |
tcgattcatagtactagtactatctaattaagtatact-aagctatctagacattgcaaaaaagtagaagaattatattaacccgttgcaaaaaagtagt |
1532199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 814 - 983
Target Start/End: Original strand, 1532227 - 1532396
Alignment:
| Q |
814 |
tcttgactctaatgaaaatattaatgttaagtgtgataataaatattgtttaagaaatttatttaattactgatagccaatggcgagctgaagataaagt |
913 |
Q |
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| T |
1532227 |
tcttgactctaatgaaaatattaatgttaagtgtgataataaatattgtttaagaaatttatttaattactgatagccaatggtgagctgaagataaagt |
1532326 |
T |
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| Q |
914 |
gtctaaaatacctccgaatgaacttgagatcattgaagaattggacttggaatttaactttgctcaagac |
983 |
Q |
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| T |
1532327 |
gtctaaaatacctccgaatgaacttgagatcattgaagaattggacttgaattttaattttgctcaagac |
1532396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 23053733 - 23053606
Alignment:
| Q |
102 |
gtacttgttttcgtcacttggatggttgggatattcatagttgttgtgcaaaggtgggagaatttggttcaacagatgaaagatataaggaatgttgtgg |
201 |
Q |
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| T |
23053733 |
gtacttgttttcgtcagttgcatggttgggatattgacggttgttgtgcaaaggtggaatgatttggttcaacatatgaaagatataaagaatgttgtgg |
23053634 |
T |
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| Q |
202 |
caaacaagttttttagccaatcaagttatg |
231 |
Q |
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| T |
23053633 |
caaacaag--ttttagtcaatcaagttatg |
23053606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1531448 - 1531500
Alignment:
| Q |
7 |
acccacctctttgtcttgtgcaaactatggttttgatggtcatctcatgtgtt |
59 |
Q |
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| T |
1531448 |
acccacctctttgtcttgtgcaaactatggttttgatggtcatctcatgtgtt |
1531500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 911 - 983
Target Start/End: Original strand, 1536991 - 1537063
Alignment:
| Q |
911 |
agtgtctaaaatacctccgaatgaacttgagatcattgaagaattggacttggaatttaactttgctcaagac |
983 |
Q |
| |
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| T |
1536991 |
agtgtctaaaatgcctctaaatgaacttaggatcattgaagaattggacttggattttaattttgctcaagac |
1537063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 23053529 - 23053436
Alignment:
| Q |
294 |
attatgtctttatatttctaatttcttatatatattaaatacagtgagttttacatttcaatatttctctactatctttcatctttgatattaacaatta |
393 |
Q |
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| T |
23053529 |
attatgtctttatatttctaatttctt----atattaaatacaatgagttttacctttcaatatttctgtac--cttttcatcttt-atattaacaatta |
23053437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 814 - 868
Target Start/End: Original strand, 1536853 - 1536907
Alignment:
| Q |
814 |
tcttgactctaatgaaaatattaatgttaagtgtgataataaatattgtttaaga |
868 |
Q |
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|||||||||| |||||||||||||||| |||| |||| |||||| |||||||||| |
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| T |
1536853 |
tcttgactctgatgaaaatattaatgtcaagtatgatgataaatgttgtttaaga |
1536907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 489 - 584
Target Start/End: Original strand, 26413522 - 26413617
Alignment:
| Q |
489 |
gtagcggaattggttgatgcaaagggaaattggaataatcaaattctagattggctgcctaatgatatcagaaagaagattgactcaattctgcca |
584 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
26413522 |
gtagtggaattggttgatacaaagggaaattggaataatcgaatgctcgattgattgcctaatgatatcagaaagaagactgactcaattctgcca |
26413617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 26412545 - 26412620
Alignment:
| Q |
7 |
acccacctctttgtcttgtgcaaactatggttttgatggtcatctcatgtgt--tgtttgtgtgttattggtgctt |
80 |
Q |
| |
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| T |
26412545 |
acccacctgttcgtctactgcaaagtatggttttgatggtcatggcatgtgtcgtgtgtgtgtgttattggtgctt |
26412620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 712 - 790
Target Start/End: Original strand, 41486292 - 41486369
Alignment:
| Q |
712 |
cgtcgattcatagtgctagtactatctaattaagtatactaaagctatctagacattgcaaaaaagtagaagaattata |
790 |
Q |
| |
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||||| ||| |||| |||||||||| |||||||||||| | ||||||||| | |||||||| ||||||||| |||||| |
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| T |
41486292 |
cgtcggttcgtagtactagtactatttaattaagtataat-aagctatcttaatattgcaaacaagtagaaggattata |
41486369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 721 - 790
Target Start/End: Original strand, 41488910 - 41488978
Alignment:
| Q |
721 |
atagtgctagtactatctaattaagtatactaaagctatctagacattgcaaaaaagtagaagaattata |
790 |
Q |
| |
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|||||||||||||||| |||||||||||| | |||||||| | |||||||| ||||||||| |||||| |
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| T |
41488910 |
atagtgctagtactatttaattaagtatagt-gagctatcttaatattgcaaacaagtagaaggattata |
41488978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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