View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-20 (Length: 757)
Name: NF1441A-Insertion-20
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-20 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 9154926 - 9154796
Alignment:
| Q |
8 |
acaataaatattttaatgaagtaatgagaatgggaacaggtttctgaaaagaatataagaagagagaatgcaatttctaa--acatgttccatgaataaa |
105 |
Q |
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| T |
9154926 |
acaataaatattttaatgaagtaatgagaatgggaacaggtttcagaaaagaatataagaagagagaatgcaatttctaatcatatattccatgaataaa |
9154827 |
T |
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| Q |
106 |
atacga--actgtgaggtaagtgatattaga |
134 |
Q |
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| T |
9154826 |
atatgatcaaggtgaggtaagtgatattaga |
9154796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 9255834 - 9255712
Alignment:
| Q |
11 |
ataaatattttaatgaagtaatgagaatgggaacaggtttctgaaaagaatataagaagagagaatgcaattt--ctaaacatgttccatgaataaaata |
108 |
Q |
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| T |
9255834 |
ataaatattttaatgaagcaatgtgaacggggacttgtttcagaaaagaatataaga---gtgaatggaatttttctaatcattttccataaataaaata |
9255738 |
T |
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| Q |
109 |
cgaactgtgaggtaagtgatattaga |
134 |
Q |
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| T |
9255737 |
tgatttgtgaggtaagtgatattaga |
9255712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 9169649 - 9169769
Alignment:
| Q |
13 |
aaatattttaatgaagtaatgagaatgggaacaggtttctgaaaagaatataagaagagagaatgcaat--ttctaaacatgttccatgaataaaatacg |
110 |
Q |
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| T |
9169649 |
aaatattttaatgaagcaatgtgaacggggacttgtttcagaaaagaataaaaga---gtgaatggaatatttctaatcattttccataaataaaatatg |
9169745 |
T |
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| Q |
111 |
aactgtgaggtaagtgatattaga |
134 |
Q |
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| T |
9169746 |
atttgtgaggtaagtgatattaga |
9169769 |
T |
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