View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-23 (Length: 395)
Name: NF1441A-Insertion-23
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-23 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 35742987 - 35742600
Alignment:
| Q |
8 |
aaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttgggcatcaaagasctagttgggactagtattttgtctaaaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
35742987 |
aaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtctaaaca |
35742888 |
T |
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| Q |
108 |
gtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctcgaagatctcgaagatccagtaacttat |
207 |
Q |
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| T |
35742887 |
gtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctcgaagatctcgaagatccagtaacttat |
35742788 |
T |
|
| Q |
208 |
aaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacmaatttgagatcacaattgaacacc |
307 |
Q |
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| T |
35742787 |
agaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacacc |
35742688 |
T |
|
| Q |
308 |
tcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctata |
395 |
Q |
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| T |
35742687 |
tcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctata |
35742600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 35749347 - 35748969
Alignment:
| Q |
10 |
attgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttgggcatcaaagasctagttgggactagtattttgtctaaacagt |
109 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| | ||||| ||| |||| ||||||||| |||||| |||||||||||||||| ||| | | |
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| T |
35749347 |
attgatcgaatcagtgacttaccatgtaatgttattgatgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtcaaaaaatt |
35749248 |
T |
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| Q |
110 |
ggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctcgaagatctcgaagatccagtaacttataa |
209 |
Q |
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||||||||| ||| ||| |||||||| |||||||||| |||| |||| |||||| |||||| |||||||| ||| | | || ||| ||| ||| |
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| T |
35749247 |
ggaggtatatgtgaacttcagccccacaactttggtttggtgaagactattttgacgagtacaaggatctc---gattaccctggccctgtagcttctaa |
35749151 |
T |
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| Q |
210 |
aattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacmaatttgagatcacaattgaacacctc |
309 |
Q |
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||| ||||| |||||||| ||||| ||| | || |||||| |||||||| |||||||||| || |||||||| | || |||||| ||||||| |||| |
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| T |
35749150 |
aatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattcctc |
35749051 |
T |
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| Q |
310 |
gataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgc |
391 |
Q |
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| T |
35749050 |
agtacgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgc |
35748969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 35739741 - 35739703
Alignment:
| Q |
18 |
aatcagtgacttaccatgcaatgtcattgacggcatcct |
56 |
Q |
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| T |
35739741 |
aatcagtgacttaccatgcaatgccattgacggcatcct |
35739703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 3727 - 3613
Alignment:
| Q |
10 |
attgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttgggcatcaaagasctagttgggactagtattttgtctaaacagt |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| | || ||| || |||||| | ||| |
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| T |
3727 |
attgatcgaatcagtgacttaccatgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagt |
3628 |
T |
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| Q |
110 |
ggaggtataagtgga |
124 |
Q |
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||||||||| ||||| |
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| T |
3627 |
ggaggtatatgtgga |
3613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 40011277 - 40011146
Alignment:
| Q |
10 |
attgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttgggcatcaaagasctagttgggactagtattttgtctaaacagt |
109 |
Q |
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|||||||||||||||||||||||| | |||||||| || |||||||| ||||||| | | ||| ||||| |||||||| || |||||| | ||| |
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| T |
40011277 |
attgatcgaatcagtgacttaccaagtaatgtcatcgatggcatcctagaacacttgaacgcccgagacctagtgaggactagtgttctgtctagaaagt |
40011178 |
T |
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| Q |
110 |
ggaggtataagtggactaaagccccacgactt |
141 |
Q |
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| T |
40011177 |
ggaggtatatgtggattacagtcccacgactt |
40011146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 10862282 - 10862355
Alignment:
| Q |
11 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttgggcatcaaagasctagtt |
84 |
Q |
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| T |
10862282 |
ttgattgaattagtgacttaccatgtaatgtcattgatggcatcctaaaacacttgagcatccaagagctagtt |
10862355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 16865344 - 16865386
Alignment:
| Q |
11 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcat |
53 |
Q |
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| T |
16865344 |
ttgatcgaatcagtgacttaccaagtaatgtcattgatggcat |
16865386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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