View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-25 (Length: 394)
Name: NF1441A-Insertion-25
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-25 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 386
Target Start/End: Original strand, 19117377 - 19117731
Alignment:
| Q |
29 |
aggagttgaaattatgtagctgttttcttcttttcctttaataacttgtgaaacttggttttgctttttggcatagagctgaattggtccaccaagaagt |
128 |
Q |
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| T |
19117377 |
aggagttgaaattatgtagctgttttcttcttttcctttaataacttgtgaaacttggttttgctttttggcataaagctgaattggtccaccaagaagt |
19117476 |
T |
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| Q |
129 |
tttgccgaacaattcttggaagtttttgtgttgtctgagggaaggttaaccttgaaggagccatcttcttctgtagatgtgatagctaggtttttagcac |
228 |
Q |
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| T |
19117477 |
tttgccaaacagttcattgaagtttttgtgttgtctgagggaaggttaaccttgaaggagccatcttcttctgtagttgtcatagctaggtttttaacac |
19117576 |
T |
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| Q |
229 |
cttcacatttcactgtgaccttaatatctgagaatcatgcgagaacaatgagagtcaaggtacaagatatgcatataatatatgaatctagttcttctga |
328 |
Q |
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| T |
19117577 |
cttcacatttcactgtgaccttaatatctgaaaatcatgcaagaacaatgagagtcaaggtaaaag--atgcataaaat-tttgaagctagttcttctaa |
19117673 |
T |
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| Q |
329 |
agttgatatatcattttgaagtgtaacatgagtgacatcggccgtttgacacataagg |
386 |
Q |
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| T |
19117674 |
agttaataaatcattttgaagtgtaaaatgagtaacatcgaccatttgacaaataagg |
19117731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 28001755 - 28001691
Alignment:
| Q |
49 |
tgttttcttcttttccttta-ataacttgtgaaacttggttttgctttttggcatagagctgaat |
112 |
Q |
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| T |
28001755 |
tgttttcttcttttcgcttagataatttgtgaaacttggttttgatttttgtaataaagctgaat |
28001691 |
T |
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