View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-27 (Length: 332)

Name: NF1441A-Insertion-27
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-27
NF1441A-Insertion-27
[»] chr7 (34 HSPs)
chr7 (9-328)||(32650943-32651264)
chr7 (198-327)||(36328326-36328456)
chr7 (198-328)||(28538675-28538806)
chr7 (198-317)||(23548117-23548237)
chr7 (200-317)||(14602771-14602889)
chr7 (200-328)||(2411732-2411861)
chr7 (200-328)||(40496139-40496268)
chr7 (198-317)||(35456236-35456356)
chr7 (200-307)||(39342160-39342268)
chr7 (204-328)||(30080312-30080437)
chr7 (198-306)||(42816965-42817074)
chr7 (198-318)||(43791452-43791573)
chr7 (198-305)||(45984777-45984885)
chr7 (198-305)||(45989137-45989245)
chr7 (198-327)||(26416342-26416471)
chr7 (202-328)||(9784455-9784583)
chr7 (197-328)||(37460467-37460599)
chr7 (197-264)||(14790552-14790620)
chr7 (197-257)||(26161984-26162045)
chr7 (206-308)||(30587436-30587537)
chr7 (200-248)||(40495701-40495749)
chr7 (197-328)||(45181754-45181885)
chr7 (200-331)||(46699747-46699879)
chr7 (197-236)||(40667834-40667873)
chr7 (190-243)||(3905240-3905292)
chr7 (198-317)||(41442601-41442721)
chr7 (198-249)||(35488713-35488763)
chr7 (202-276)||(38320751-38320825)
chr7 (207-307)||(30629501-30629602)
chr7 (197-236)||(6498611-6498650)
chr7 (249-328)||(19865607-19865686)
chr7 (200-242)||(29639063-29639105)
chr7 (220-276)||(45967521-45967578)
chr7 (198-249)||(1580389-1580441)
[»] chr4 (32 HSPs)
chr4 (190-327)||(47108640-47108778)
chr4 (195-328)||(2126257-2126391)
chr4 (198-307)||(40547766-40547876)
chr4 (197-317)||(42775777-42775898)
chr4 (197-307)||(35470564-35470675)
chr4 (200-317)||(46242622-46242740)
chr4 (200-307)||(41139912-41140020)
chr4 (201-304)||(13318216-13318319)
chr4 (198-328)||(21782392-21782523)
chr4 (194-308)||(26534927-26535041)
chr4 (201-317)||(56118170-56118287)
chr4 (198-317)||(30303550-30303670)
chr4 (200-292)||(28751744-28751837)
chr4 (202-332)||(31947988-31948119)
chr4 (203-328)||(42776504-42776630)
chr4 (201-328)||(27284221-27284349)
chr4 (198-248)||(16516668-16516718)
chr4 (200-259)||(10633181-10633241)
chr4 (197-248)||(31474011-31474062)
chr4 (202-307)||(46242169-46242274)
chr4 (204-328)||(16299781-16299906)
chr4 (197-308)||(5579648-5579760)
chr4 (230-305)||(17727488-17727564)
chr4 (200-248)||(21012439-21012487)
chr4 (200-248)||(54566674-54566722)
chr4 (199-250)||(41983366-41983417)
chr4 (198-248)||(53760322-53760372)
chr4 (200-249)||(3803725-3803774)
chr4 (200-249)||(24705829-24705878)
chr4 (200-233)||(43955048-43955081)
chr4 (198-276)||(19461264-19461343)
chr4 (196-248)||(29091625-29091677)
[»] chr8 (39 HSPs)
chr8 (197-328)||(44346218-44346350)
chr8 (200-328)||(43185400-43185529)
chr8 (198-328)||(34009109-34009240)
chr8 (198-307)||(29256911-29257021)
chr8 (198-307)||(29482339-29482449)
chr8 (200-317)||(33986428-33986546)
chr8 (200-307)||(14679-14787)
chr8 (198-325)||(35978590-35978718)
chr8 (206-328)||(40733641-40733764)
chr8 (202-325)||(26519984-26520108)
chr8 (201-292)||(31980047-31980139)
chr8 (200-307)||(33376829-33376937)
chr8 (201-317)||(10593504-10593620)
chr8 (201-292)||(31976666-31976758)
chr8 (200-317)||(1087846-1087964)
chr8 (197-328)||(29611746-29611875)
chr8 (202-317)||(13145015-13145131)
chr8 (196-317)||(44890029-44890151)
chr8 (197-248)||(9983149-9983200)
chr8 (202-259)||(36103250-36103308)
chr8 (197-317)||(24051703-24051824)
chr8 (204-328)||(31976122-31976247)
chr8 (200-259)||(30444806-30444866)
chr8 (204-307)||(43168100-43168204)
chr8 (200-243)||(7669142-7669185)
chr8 (200-257)||(23011885-23011944)
chr8 (213-248)||(7079790-7079825)
chr8 (200-239)||(13823458-13823497)
chr8 (198-276)||(28324221-28324300)
chr8 (202-232)||(34390459-34390489)
chr8 (200-241)||(6421788-6421829)
chr8 (202-243)||(8049683-8049724)
chr8 (215-248)||(8469900-8469933)
chr8 (268-317)||(15718587-15718636)
chr8 (202-282)||(24045430-24045511)
chr8 (201-238)||(26520509-26520546)
chr8 (200-328)||(28190231-28190360)
chr8 (202-257)||(15719420-15719476)
chr8 (200-248)||(36624810-36624858)
[»] chr3 (33 HSPs)
chr3 (197-332)||(24241708-24241844)
chr3 (184-307)||(53469935-53470059)
chr3 (195-307)||(48948023-48948136)
chr3 (197-328)||(36397508-36397640)
chr3 (194-328)||(671182-671317)
chr3 (200-307)||(34089017-34089125)
chr3 (202-308)||(28181800-28181907)
chr3 (200-306)||(43863486-43863593)
chr3 (200-308)||(7976991-7977100)
chr3 (200-328)||(35279470-35279599)
chr3 (200-327)||(21307111-21307239)
chr3 (204-325)||(34396148-34396270)
chr3 (203-307)||(48824637-48824742)
chr3 (200-328)||(52527430-52527559)
chr3 (200-306)||(21731361-21731468)
chr3 (197-300)||(28092112-28092215)
chr3 (200-306)||(38506484-38506591)
chr3 (198-259)||(19475966-19476028)
chr3 (200-276)||(2105202-2105279)
chr3 (199-240)||(50168190-50168231)
chr3 (208-307)||(53129434-53129534)
chr3 (198-259)||(8762276-8762338)
chr3 (209-290)||(36636285-36636367)
chr3 (197-317)||(645732-645853)
chr3 (200-259)||(33871764-33871824)
chr3 (200-259)||(47714426-47714486)
chr3 (197-282)||(37054862-37054948)
chr3 (200-317)||(42005473-42005591)
chr3 (191-248)||(47767927-47767984)
chr3 (230-328)||(6836590-6836689)
chr3 (198-249)||(44288022-44288073)
chr3 (235-328)||(46707044-46707139)
chr3 (200-249)||(54761426-54761475)
[»] chr2 (35 HSPs)
chr2 (196-328)||(35047197-35047330)
chr2 (197-328)||(13018165-13018297)
chr2 (197-327)||(21504871-21505002)
chr2 (200-328)||(1583332-1583461)
chr2 (200-328)||(19231017-19231145)
chr2 (200-328)||(44256054-44256183)
chr2 (200-307)||(769473-769581)
chr2 (200-307)||(7309436-7309544)
chr2 (200-307)||(33188789-33188897)
chr2 (198-328)||(8735963-8736094)
chr2 (200-317)||(3092677-3092795)
chr2 (200-328)||(39630646-39630775)
chr2 (198-325)||(14306362-14306490)
chr2 (194-328)||(2925071-2925206)
chr2 (203-317)||(19193746-19193861)
chr2 (198-328)||(28021704-28021835)
chr2 (200-317)||(17906073-17906191)
chr2 (197-317)||(32839185-32839306)
chr2 (202-328)||(11141725-11141852)
chr2 (200-328)||(41585194-41585323)
chr2 (226-328)||(11595225-11595328)
chr2 (226-304)||(11607151-11607230)
chr2 (200-243)||(19072337-19072380)
chr2 (202-308)||(7611421-7611528)
chr2 (200-282)||(30698747-30698830)
chr2 (198-276)||(31941428-31941507)
chr2 (200-249)||(7684605-7684654)
chr2 (200-259)||(10480269-10480329)
chr2 (197-248)||(6749576-6749627)
chr2 (197-248)||(11794057-11794108)
chr2 (197-282)||(7167185-7167271)
chr2 (199-248)||(32839714-32839763)
chr2 (200-328)||(44205193-44205320)
chr2 (204-259)||(11532118-11532174)
chr2 (197-241)||(45094006-45094050)
[»] chr5 (35 HSPs)
chr5 (198-328)||(33146501-33146632)
chr5 (200-328)||(927721-927850)
chr5 (197-328)||(17541881-17542013)
chr5 (200-307)||(41761744-41761852)
chr5 (197-327)||(12480321-12480452)
chr5 (200-317)||(32249649-32249767)
chr5 (200-328)||(28490326-28490456)
chr5 (200-308)||(22304734-22304843)
chr5 (200-328)||(1209086-1209213)
chr5 (199-308)||(6771822-6771932)
chr5 (197-282)||(22304649-22304735)
chr5 (202-326)||(28489884-28490009)
chr5 (200-328)||(33995444-33995573)
chr5 (202-328)||(14835211-14835338)
chr5 (198-322)||(15579996-15580123)
chr5 (199-328)||(13390961-13391078)
chr5 (201-328)||(37091007-37091135)
chr5 (200-262)||(8255443-8255506)
chr5 (199-317)||(8264877-8264996)
chr5 (197-248)||(35111712-35111763)
chr5 (200-257)||(25935151-25935209)
chr5 (204-328)||(15270421-15270546)
chr5 (200-259)||(12064318-12064378)
chr5 (196-259)||(20320525-20320589)
chr5 (228-324)||(30519379-30519475)
chr5 (228-324)||(30559719-30559815)
chr5 (204-317)||(37241163-37241277)
chr5 (200-263)||(40089412-40089476)
chr5 (208-262)||(38178813-38178868)
chr5 (208-262)||(38206037-38206092)
chr5 (202-248)||(10315150-10315196)
chr5 (202-259)||(19533769-19533827)
chr5 (197-282)||(22303385-22303471)
chr5 (202-328)||(17492691-17492818)
chr5 (200-249)||(32317174-32317222)
[»] scaffold0318 (1 HSPs)
scaffold0318 (199-327)||(3278-3407)
[»] chr1 (34 HSPs)
chr1 (200-307)||(946821-946929)
chr1 (197-328)||(15467483-15467615)
chr1 (213-328)||(50472136-50472252)
chr1 (197-326)||(21267343-21267473)
chr1 (205-328)||(41822078-41822202)
chr1 (196-308)||(6470224-6470338)
chr1 (200-328)||(28632126-28632255)
chr1 (213-317)||(32647724-32647829)
chr1 (194-300)||(32128532-32128639)
chr1 (197-322)||(35499475-35499601)
chr1 (202-328)||(44571611-44571738)
chr1 (200-308)||(31166651-31166761)
chr1 (200-259)||(47541851-47541911)
chr1 (200-317)||(37446883-37447001)
chr1 (198-262)||(220639-220704)
chr1 (196-248)||(24273080-24273132)
chr1 (198-328)||(41480952-41481083)
chr1 (197-327)||(48953967-48954097)
chr1 (198-248)||(31196903-31196953)
chr1 (200-281)||(37447426-37447508)
chr1 (200-308)||(37036504-37036613)
chr1 (200-308)||(39887506-39887615)
chr1 (198-249)||(8225273-8225324)
chr1 (198-248)||(4663811-4663861)
chr1 (200-257)||(12293022-12293080)
chr1 (194-248)||(37447965-37448019)
chr1 (249-307)||(41577847-41577905)
chr1 (196-249)||(47165071-47165124)
chr1 (205-260)||(13182107-13182163)
chr1 (202-317)||(23955981-23956097)
chr1 (197-262)||(10166981-10167047)
chr1 (198-235)||(32288012-32288049)
chr1 (200-248)||(23969439-23969487)
chr1 (203-282)||(44571144-44571224)
[»] chr6 (16 HSPs)
chr6 (200-306)||(8475571-8475678)
chr6 (200-328)||(15615920-15616049)
chr6 (198-317)||(1368907-1369027)
chr6 (199-328)||(10105426-10105556)
chr6 (200-328)||(6357825-6357953)
chr6 (197-259)||(34244840-34244903)
chr6 (200-281)||(1195771-1195853)
chr6 (200-317)||(28918588-28918706)
chr6 (194-249)||(9697888-9697943)
chr6 (200-293)||(724811-724905)
chr6 (198-248)||(13487437-13487487)
chr6 (196-248)||(31413361-31413413)
chr6 (200-259)||(34364894-34364954)
chr6 (202-282)||(15833073-15833154)
chr6 (202-243)||(26855480-26855521)
chr6 (198-257)||(29889294-29889355)
[»] scaffold0301 (1 HSPs)
scaffold0301 (213-307)||(7593-7688)
[»] scaffold0129 (1 HSPs)
scaffold0129 (226-328)||(19333-19436)
[»] scaffold0169 (1 HSPs)
scaffold0169 (200-328)||(4439-4568)
[»] scaffold0417 (1 HSPs)
scaffold0417 (203-308)||(11499-11605)
[»] scaffold0337 (1 HSPs)
scaffold0337 (214-317)||(15500-15604)
[»] scaffold0065 (1 HSPs)
scaffold0065 (214-317)||(2542-2646)
[»] scaffold0027 (1 HSPs)
scaffold0027 (201-259)||(11319-11378)
[»] scaffold0047 (1 HSPs)
scaffold0047 (202-250)||(49838-49886)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 32651264 - 32650943
Alignment:
Q  9 gggagacaacctatgtaaataactcctcactccaggtatataattttattcttttatgtatattttaacataaaataagatgagagtgtaattcattaat 108  Q
    |||| |||| ||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||    
T  32651264 gggaaacaagctatgaaaataactcctcactccaggtata--attttattcttttatctatattttaacataaaatgagatgagagtgtaattcatgtat 32651167  T
Q  109 ttgctcttgttaataannnnnnnng--ggccaaaagagaaaaataataaatagactcttactaatggtaggtatgtgatattcaaataaactaagagtgt 206  Q
    ||| ||||| ||||||           ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  32651166 ttgttcttgctaataattttttttttaggctaaaagagaacaataataaatagactcttactaatagtaggtatgtgatattcaaataaactaagagtga 32651067  T
Q  207 gtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaatta-ctttcgtttctcaatacctttgtttgg 304  Q
    |||||||||||||||||| ||||| |||||||||| | |||  |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  32651066 gtttggatgaggtaattgggaaatcttaaagaattcagaatcctaggcaatttaaatgatgtaattaaattacctttcgtttttcaatacctttgtttgg 32650967  T
Q  305 atggtgtagtaaagaatttcattg 328  Q
    |||||||| |||| ||||||||||    
T  32650966 atggtgtaataaaaaatttcattg 32650943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 36328326 - 36328456
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||||| |    
T  36328326 taagagtgtgtttggatgaggtaattgagaaattttaaaaaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaatactt 36328425  T
Q  297 ttgtttggatggtgtagtaaagaatttcatt 327  Q
    |||||||||||| ||| | || |||||||||    
T  36328426 ttgtttggatggagtaattaaaaatttcatt 36328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 198 - 328
Target Start/End: Original strand, 28538675 - 28538806
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||| ||||||||| | |    
T  28538675 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatttctcaattctt 28538774  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||  ||| |||| || |||||||    
T  28538775 ttgtttggatgaagtaataaaaaaattcattg 28538806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 23548117 - 23548237
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||| ||||| |    
T  23548117 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggaaatttaaatgattcaattaaattactttcatttctaaatactt 23548216  T
Q  297 ttgtttggatggtgtagtaaa 317  Q
    |||||||||||| ||| ||||    
T  23548217 ttgtttggatggagtaataaa 23548237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 14602771 - 14602889
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  14602771 agagtgtgtttggatgaggtaattgaaaaattttaaagaatttagaattctaggcaatttaaataattcaattaaattactttcatttctcaattctttt 14602870  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  14602871 gtttggatggagtaataaa 14602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 2411861 - 2411732
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  2411861 agagagtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctttt 2411762  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  2411761 gtttggatgaagtaataaaaaaattcattg 2411732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 40496268 - 40496139
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  40496268 agagtatgtttggatgaggtaattaagaaattttaaagaatttataattctaggcaatttaaatgattcaattaaattactttcatttctcaattctttt 40496169  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  40496168 gtttggatgaagtaataaaaaaattcattg 40496139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 198 - 317
Target Start/End: Complemental strand, 35456356 - 35456236
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |    
T  35456356 taagagtgtgtttggatgaggtaattgaaaatttttaaagaatttagaattctaggcaatttaaataattcaattaaattactttcatttctcaattctt 35456257  T
Q  297 ttgtttggatggtgtagtaaa 317  Q
    |||||||||||| ||| ||||    
T  35456256 ttgtttggatggagtaataaa 35456236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 39342160 - 39342268
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||| ||||| | |||    
T  39342160 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttttcaattctttt 39342259  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  39342260 gtttggatg 39342268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 30080312 - 30080437
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||| || ||||||||||| ||  ||||||||||||||  ||||||||||| |||||||    
T  30080312 tgtgttttgatgaggtaattgagaaattttgaagaatttagaattctaagcaatttaaatgattcaattaaattacttttatttctcaatacttttgttt 30080411  T
Q  303 ggatggtgtagtaaagaatttcattg 328  Q
    |||||| ||| |||| ||||||||||    
T  30080412 ggatggagtaataaaaaatttcattg 30080437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 42817074 - 42816965
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  |||| |||||||||| ||||||||| | |    
T  42817074 taagagtgtgttaggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattgaattactttcatttctcaattctt 42816975  T
Q  297 ttgtttggat 306  Q
    ||||||||||    
T  42816974 ttgtttggat 42816965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 43791573 - 43791452
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| |||| | |||||||||||| ||  |||||||||| |||| ||||||||||| |    
T  43791573 taagagtgtgtttggatgaggtaattggaaaattttaaagaatttagaattcttggcaatttaaatgattcaattaaattattttcatttctcaatactt 43791474  T
Q  297 ttgtttggatggtgtagtaaag 318  Q
    |||||||||||| ||| |||||    
T  43791473 ttgtttggatggagtaataaag 43791452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 45984885 - 45984777
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||| ||||| |    
T  45984885 taagagtgtgtttggatggggtaatagagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttcttaatactt 45984786  T
Q  297 ttgtttgga 305  Q
    |||||||||    
T  45984785 ttgtttgga 45984777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 45989245 - 45989137
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||| ||||| |    
T  45989245 taagagtgtgtttggatggggtaatagagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttcttaatactt 45989146  T
Q  297 ttgtttgga 305  Q
    |||||||||    
T  45989145 ttgtttgga 45989137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 327
Target Start/End: Complemental strand, 26416471 - 26416342
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||| ||||| ||  ||||||||||||||| ||| | ||||| |    
T  26416471 taagagtgtgtttg-atgaggtaattgagaaattttgaagaatttagaattctaggcaatctaaataattcaattaaattactttcattttttaatactt 26416373  T
Q  297 ttgtttggatggtgtagtaaagaatttcatt 327  Q
    |||||||||||  ||| |||| |||||||||    
T  26416372 ttgtttggatgaagtaataaaaaatttcatt 26416342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 9784455 - 9784583
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaa-gaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttg 299  Q
    |||||||||||| || ||||||||||||||||||| ||||||| ||||| |||||||||| || ||  ||||||||||||||  ||||||||| | ||||    
T  9784455 agtgtgtttggacgaagtaattgagaaattttaaaagaatttaaaattttaggcaatttagatgattcaattaaattacttttatttctcaattcttttg 9784554  T
Q  300 tttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||  ||| |||| || |||||||    
T  9784555 tttggatgaagtaataaaaaaattcattg 9784583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 37460467 - 37460599
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||||||||| |||||||||||||||||| || |||||||||||||| |||| ||| ||||| |||| ||  ||| ||| | ||||  |||||||||||     
T  37460467 ctaagagtgtatttggatgaggtaattgaaaatttttaaagaatttaaaattctagacaattcaaataattcaataaaaatgctttaatttctcaatact 37460566  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||||  || |||| ||||||||||    
T  37460567 tttgtttggatggaataataaaaaatttcattg 37460599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 14790620 - 14790552
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaatta 264  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||  ||||||||||||||||    
T  14790620 ctaagagtgtgtttggatgaggtaattggaaaattttaaagaatttagaatcctaggcaatttaaatta 14790552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 26161984 - 26162045
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatt 257  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||    
T  26161984 ctaagagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggcaatt 26162045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 30587436 - 30587537
Alignment:
Q  206 tgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttgg 304  Q
    |||||||| ||||||||||  |||||||| |||||||| |||| |||||||||||||  ||  ||||||||||||||| ||||||||| |  ||||||||    
T  30587436 tgtttggacgaggtaattggaaaattttagagaatttagaattctaggcaatttaaaagattcaattaaattactttcatttctcaattc--ttgtttgg 30587533  T
Q  305 atgg 308  Q
    ||||    
T  30587534 atgg 30587537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 40495749 - 40495701
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  40495749 agagtgtgtttggatgaggtaattgagaaattttgaagaatttagaatt 40495701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 45181754 - 45181885
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||| |||||||| ||| |||| |||| ||||||||| |||||||  |||||| || | ||| ||||| |||       
T  45181754 ctaagagtgtgtttggatgaggtaattga-aaattttagagagtttagaattctaggcaattgaaattattcaattaatttgccttcatttctaaatctt 45181852  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||| | ||| |||| || |||||||    
T  45181853 tttgtttggatagagtaataaaaaaattcattg 45181885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 331
Target Start/End: Original strand, 46699747 - 46699879
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||| || | | || |||||||||||| ||||||||| ||||| | |||||| |||||||  ||||||||||| ||| ||||| ||||   ||    
T  46699747 agagtgtgtttagacgggatagttgagaaattttgaagaatttagaattttatgcaattcaaattattcaattaaattaccttcatttctaaatattatt 46699846  T
Q  299 gtttggatggtgtagtaaagaatttcattggca 331  Q
    |||||||||| ||| || | |||||||||||||    
T  46699847 gtttggatggagtaatagaaaatttcattggca 46699879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 40667873 - 40667834
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40667873 ctaagagtgtgtttggatgaggtaattgagaaattttaaa 40667834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 3905240 - 3905292
Alignment:
Q  190 aaataaactaagagtgtgtttggatgaggtaattgagaaattttaaagaattta 243  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  3905240 aaatacactaagagtgt-tttggttgaggtaattgagaaattttaaagaattta 3905292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 41442601 - 41442721
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| | ||| || || ||||       
T  41442601 taagagtgtgtttggattgggtaattgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgccttcattcctaaatatta 41442700  T
Q  297 ttgtttggatggtgtagtaaa 317  Q
    |||||||||||| ||| ||||    
T  41442701 ttgtttggatggagtaataaa 41442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 35488763 - 35488713
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  35488763 taagagtgtgtttggatgatgtaattga-aaattttaaagaatttaaaattt 35488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 38320825 - 38320751
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaatt 276  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||| |||| ||  |||||||||    
T  38320825 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcaattcaaatgatacaattaaatt 38320751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 30629602 - 30629501
Alignment:
Q  207 gtttggatgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttgga 305  Q
    |||||||||||||||||||    ||||  | |||||| ||||| ||||||||||||| ||  ||||||||||||||| ||| ||||| | ||||||||||    
T  30629602 gtttggatgaggtaattgattttttttttaaaatttaaaattttaggcaatttaaatgattcaattaaattactttcatttttcaattcttttgtttgga 30629503  T
Q  306 tg 307  Q
    ||    
T  30629502 tg 30629501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 6498611 - 6498650
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaa 236  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  6498611 ctaagagtgtgtttggatgaggtaatttggaaattttaaa 6498650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 19865607 - 19865686
Alignment:
Q  249 taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||| ||||||||| ||  |||||||||| |||| |||||| |||| ||||||||||| | ||| |||| ||||||||||    
T  19865607 taggtaatttaaatgattcaattaaattaatttcatttctcgatacttttgtttggattgagtaataaaaaatttcattg 19865686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 29639063 - 29639105
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaattt 242  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  29639063 agagtgtgtttggatgaggtaatttgaaaattttaaagaattt 29639105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 45967578 - 45967521
Alignment:
Q  220 aattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaatt 276  Q
    |||||| ||||||||||||||||| || |||| ||||||||||| || ||||||||||    
T  45967578 aattgacaaattttaaagaatttaaaattttaagcaatttaaataatttaattaaatt 45967521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 1580441 - 1580389
Alignment:
Q  198 taagagtgtgt-ttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||||||||| ||||||||||||||||| |  |||||||||||||| |||||    
T  1580441 taagagtgtgtgttggatgaggtaattgaaattttttaaagaatttaaaattt 1580389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 190 - 327
Target Start/End: Complemental strand, 47108778 - 47108640
Alignment:
Q  190 aaataaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttct 288  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| |||||    
T  47108778 aaataaactaagtgtgtgtttggatgaggtaattggaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttct 47108679  T
Q  289 caatacctttgtttggatggtgtagtaaagaatttcatt 327  Q
    |||||  ||||||||||||| ||| |||| |||||||||    
T  47108678 caatatttttgtttggatggagtaataaaaaatttcatt 47108640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 328
Target Start/End: Complemental strand, 2126391 - 2126257
Alignment:
Q  195 aactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaata 293  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| |||||||||     
T  2126391 aactaagagtgtgtttggatggggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaatt 2126292  T
Q  294 cctttgtttggatggtgtagtaaagaatttcattg 328  Q
    | ||||||||||||  ||| |||| || |||||||    
T  2126291 cttttgtttggatgaagtaataaaaaaattcattg 2126257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 40547766 - 40547876
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |    
T  40547766 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttaaaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctt 40547865  T
Q  297 ttgtttggatg 307  Q
    |||||||||||    
T  40547866 ttgtttggatg 40547876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 42775777 - 42775898
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||| |||||     
T  42775777 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggaaatttaaatgattcaattaaattactttcatttctaaatact 42775876  T
Q  296 tttgtttggatggtgtagtaaa 317  Q
    ||||||||||||| ||| ||||    
T  42775877 tttgtttggatggagtaataaa 42775898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 35470675 - 35470564
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| |     
T  35470675 ctaagagtgtgtttggatgatgtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattct 35470576  T
Q  296 tttgtttggatg 307  Q
    ||||||||||||    
T  35470575 tttgtttggatg 35470564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 46242622 - 46242740
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||  ||||||||||||||| ||| ||||||  |||    
T  46242622 agagtgtgtttggatgaggtaattgggaaattttaaagaatttataattctaagcaatttaaatgattgaattaaattactttcatttttcaatattttt 46242721  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  46242722 gtttggatggagtaataaa 46242740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 41140020 - 41139912
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||| || |||||||||||||||||||||||||| |||| || ||||||||||| ||  |||||||||| |||| ||||||||||| |||    
T  41140020 agagtgtgtttggaagaagtaattgagaaattttaaagaatttaaaattctaagcaatttaaatgattcaattaaattattttcatttctcaatactttt 41139921  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  41139920 gtttggatg 41139912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 13318216 - 13318319
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataatttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    |||||||||||||||| ||| |||||||||||||||||||||| | |||| | ||||||||| ||  ||||||||||||||| ||||||||||| |||||    
T  13318216 gagtgtgtttggatgatgtatttgagaaattttaaagaatttagattttatggaatttaaatgattcaattaaattactttcatttctcaatacttttgt 13318315  T
Q  301 ttgg 304  Q
    ||||    
T  13318316 ttgg 13318319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 21782523 - 21782392
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||| |||| ||   |||||| ||||||| ||||| ||||| |    
T  21782523 taagagtgtgtttggatgaggtaattgtgaaattttaaagaatttagaattctagacaattcaaatgattccattaaaatactttcatttcttaatactt 21782424  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||  ||| |||| ||||||||||    
T  21782423 ttgtttggatgtagtaataaaaaatttcattg 21782392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 308
Target Start/End: Complemental strand, 26535041 - 26534927
Alignment:
Q  194 aaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||| |||||    
T  26535041 aaactaagaatgtgtttggat-atgtagttgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttttcaat 26534943  T
Q  293 acctttgtttggatgg 308  Q
    || |||||||||||||    
T  26534942 acttttgtttggatgg 26534927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 317
Target Start/End: Original strand, 56118170 - 56118287
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttg 299  Q
    ||||||||||||||||||||||||| |||||||| |||| | | |||| |||||||||||||| || |||||||||||||||  ||||||||| | ||||    
T  56118170 gagtgtgtttggatgaggtaattgacaaattttagagaactcagaattctaggcaatttaaatgatttaattaaattacttttatttctcaattcttttg 56118269  T
Q  300 tttggatggtgtagtaaa 317  Q
    ||||||||| ||| ||||    
T  56118270 tttggatggagtaataaa 56118287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 198 - 317
Target Start/End: Complemental strand, 30303670 - 30303550
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||| ||  ||||||| ||| ||| ||||| ||||  |    
T  30303670 taagagtgtgtttggatgagataattgagaaattttaaagaatttaaaattctaggcaattcaaatgattcaattaaactaccttcatttctaaatattt 30303571  T
Q  297 ttgtttggatggtgtagtaaa 317  Q
    |||||||||||| ||| ||||    
T  30303570 ttgtttggatggagtaataaa 30303550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 28751744 - 28751837
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||| ||  ||||||||||||||| ||| |||||    
T  28751744 agagtgtgtttggatgagataattgagaaattttaaaaaatttagaattataggcaatttaaatgattcaattaaattactttcatttttcaat 28751837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 31948119 - 31947988
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    |||| ||||||| ||||||||||  || |||||||||||||| ||||| ||||||||||||| ||  ||||||||| | ||| ||||||||||| |||||    
T  31948119 agtgcgtttggacgaggtaattggaaacttttaaagaatttaaaattttaggcaatttaaatgattcaattaaattccattcatttctcaatacttttgt 31948020  T
Q  301 ttggatggtgtagtaaagaatttcattggcat 332  Q
    |||| ||| ||| |||| ||||||| ||||||    
T  31948019 ttgggtggagtaataaaaaatttcaatggcat 31947988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 42776630 - 42776504
Alignment:
Q  203 gtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtt 301  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||  || ||||||||||| ||  |||| |||||||||| ||| ||||||  ||||||    
T  42776630 gtgtgtttggatgaggtaattggaaaattttaaagaatttagaatcctaagcaatttaaatgattcaattcaattactttcatttttcaatatttttgtt 42776531  T
Q  302 tggatggtgtagtaaagaatttcattg 328  Q
    ||||||| | | |||| ||||||||||    
T  42776530 tggatggagaaataaaaaatttcattg 42776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 27284221 - 27284349
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttg 299  Q
    ||||||||||||||||  |||||   ||||||||||||||||| |||| ||||||||||||||  |  ||||||||||||||| |||||||||   ||||    
T  27284221 gagtgtgtttggatgatataatttgaaaattttaaagaatttagaattctaggcaatttaaatggttcaattaaattactttcatttctcaatttttttg 27284320  T
Q  300 tttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||  ||| |||| || |||||||    
T  27284321 tttggatgaagtaataaaaaaattcattg 27284349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 16516718 - 16516668
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  16516718 taagagtgtgtttggatgaggtaattgagaaattttgaagaatttagaatt 16516668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 10633241 - 10633181
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  10633241 agagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 10633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 31474062 - 31474011
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  31474062 ctaagagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaatt 31474011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 46242169 - 46242274
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||||||| |||||| || |||||| ||||||||| |||| |||  ||||||||| ||  ||||||||| |||||  |||||||||| |||||    
T  46242169 agtgtgtttggatgaagtaatt-aggaattttgaagaatttagaattctagataatttaaatgattcaattaaattgctttcacttctcaatacttttgt 46242267  T
Q  301 ttggatg 307  Q
    |||||||    
T  46242268 ttggatg 46242274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 16299781 - 16299906
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    |||||||| ||||||||||||  |||| ||| |||||||| |||| |||  ||||||||| ||  |||||||||||||||  || ||||||  |||||||    
T  16299781 tgtgtttgaatgaggtaattggaaaatattagagaatttaaaattctagttaatttaaatgattcaattaaattactttcagttatcaatatttttgttt 16299880  T
Q  303 ggatggtgtagtaaagaatttcattg 328  Q
    |||||  ||| |||| ||||||||||    
T  16299881 ggatgcagtaataaaaaatttcattg 16299906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 5579648 - 5579760
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||| ||||||||| |||||||||||   ||||||| ||||||||| ||||  |  |||||||||| ||  ||||||||| ||||| |||||||||||     
T  5579648 ctaagtgtgtgtttgaatgaggtaattagaaaattttgaagaatttaaaattccaaacaatttaaatgattcaattaaattcctttcatttctcaatact 5579747  T
Q  296 tttgtttggatgg 308  Q
    ||| |||||||||    
T  5579748 tttatttggatgg 5579760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 17727564 - 17727488
Alignment:
Q  230 ttttaaagaatttataatttaggc-aatttaaattatgtaattaaattactttcgtttctcaatacctttgtttgga 305  Q
    |||||||||||||| ||||||||  ||||||||| ||  ||||||||||||||| |||| |||||| ||||||||||    
T  17727564 ttttaaagaatttagaatttagggtaatttaaatgattcaattaaattactttcatttcacaatacttttgtttgga 17727488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 21012439 - 21012487
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  21012439 agagtgtgtttggatgaggtaatttaaaaattttaaagaatttaaaatt 21012487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 54566722 - 54566674
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  54566722 agagtgtgtttggatggggtaattgagaaattttaatgaatttaaaatt 54566674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 41983417 - 41983366
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattta 250  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||| ||||||    
T  41983417 aagagtgtgtttgaatgggataattgagaaattttaaagaatttagaattta 41983366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 53760322 - 53760372
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||| ||||||||||||  |||||||||||||||| ||||||||||||||    
T  53760322 taagattgtgtttggatggagtaattgagaaattttgaagaatttataatt 53760372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 3803774 - 3803725
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||||||||||||||||||||||   ||||||||||||||||| |||||    
T  3803774 agagtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattt 3803725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 24705878 - 24705829
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||| |||||    
T  24705878 agagtgtgtttggatggggtaattgaaaaattttgaagaatttagaattt 24705829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 43955048 - 43955081
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaatttt 233  Q
    ||||||||||||||||||||||||| ||||||||    
T  43955048 agagtgtgtttggatgaggtaattgggaaatttt 43955081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 19461264 - 19461343
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaa-attttaaagaatttataa-tttaggcaatttaaattatgtaattaaatt 276  Q
    |||||||||||||| ||||||||||| ||||  |||||||||||||| || ||||||||||||| || ||  |||||||||    
T  19461264 taagagtgtgtttgaatgaggtaatt-agaattttttaaagaatttaaaattttaggcaatttagatgattcaattaaatt 19461343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 29091677 - 29091625
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||||||  |||| |||||||||||| || |||||| ||||    
T  29091677 actaagagtgtgtttggatagggtatttgagaaattttgaaaaatttagaatt 29091625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 44346218 - 44346350
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| |     
T  44346218 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattct 44346317  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||||  ||| |||| || |||||||    
T  44346318 tttgtttggatgaagtaataaaaaaattcattg 44346350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 43185529 - 43185400
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  43185529 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagacaatttaaatgattcaattaaattactttcatttctcaattctttt 43185430  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| ||||||| |||||||    
T  43185429 gtttggatgaagtaataaagaaattcattg 43185400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 34009240 - 34009109
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||  |||||| |||||||| ||||||||||  |    
T  34009240 taagagtgtgtttggatgaggtagttgagaaatttcaaagaatttagaatcttaggcaatttaaataattcaattaagttactttcatttctcaatattt 34009141  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||| | | |||||||||||||||    
T  34009140 ttgtttggatggagaaataaagaatttcattg 34009109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 29256911 - 29257021
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |    
T  29256911 taagagtgtgtttggacgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctt 29257010  T
Q  297 ttgtttggatg 307  Q
    |||||||||||    
T  29257011 ttgtttggatg 29257021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 29482339 - 29482449
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||||||| | |    
T  29482339 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattataggaaatttaaatgattcaattaaattactttcatttctcaattctt 29482438  T
Q  297 ttgtttggatg 307  Q
    |||||||||||    
T  29482439 ttgtttggatg 29482449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 33986546 - 33986428
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||| ||  ||||||||||||||| ||||||||||| |||    
T  33986546 agagtgtgtttggatgaggtaattgagaaattttaaagaattcggaattctaggcaatttaaatgattcaattaaattactttcatttctcaatactttt 33986447  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  33986446 gtttggatggagtaataaa 33986428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 14787 - 14679
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  14787 agagtgtgtttggatgaggaaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctttt 14688  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  14687 gtttggatg 14679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 198 - 325
Target Start/End: Original strand, 35978590 - 35978718
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||| ||  ||||||||| ||||| ||||||||||| |    
T  35978590 taagagtgtgtttggatgaggcaattgagaaattttaaagaatttaaaattctagtcaatttaaatgattcaattaaattcctttcatttctcaatactt 35978689  T
Q  297 ttgtttggatggtgtagtaaagaatttca 325  Q
    |||||||| ||| ||| |||| |||||||    
T  35978690 ttgtttgggtggagtaataaaaaatttca 35978718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 40733641 - 40733764
Alignment:
Q  206 tgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttgg 304  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||||||||    
T  40733641 tgtttggatgaggtaattgagaaattttaaagaatttaaaattctaggcaatttaaatgattcaattaaattactttcatttctcaattcttttgtttgg 40733740  T
Q  305 atggtgtagtaaagaatttcattg 328  Q
    |||  ||| |||| || |||||||    
T  40733741 atgaagtaataaaaaaattcattg 40733764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 26519984 - 26520108
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||||| | |||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||||||| ||||||| ||||||||||| |||||    
T  26519984 agtgtgtttggataaagtaattgataaattttaaagaatttaaaattctaggcaatttaaatgattcaattaaactactttcatttctcaatacttttgt 26520083  T
Q  301 ttggatggtgtagtaaagaatttca 325  Q
    |||||||| ||| |||| |||||||    
T  26520084 ttggatggagtaataaaaaatttca 26520108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 31980047 - 31980139
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| |||||||||    
T  31980047 gagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaat 31980139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 33376829 - 33376937
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  33376829 agagtgtgtttggatgaggtaattgataaattttaaagaatttagaattctaggtaatttaaatgattcaattaaattactttcatttctcaattctttt 33376928  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  33376929 gtttggatg 33376937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 10593620 - 10593504
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttg 299  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||  ||||||||||||||| ||| | ||||| ||||    
T  10593620 gagtgtgtttggatgaggtaattgagaaattttaaa-aatttaaaattctaggcaatttaaatgattcaattaaattactttcattttttaatacttttg 10593522  T
Q  300 tttggatggtgtagtaaa 317  Q
    ||||||||| ||| ||||    
T  10593521 tttggatggagtaataaa 10593504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 31976666 - 31976758
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| |||||||||    
T  31976666 gagtgtttttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaat 31976758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 1087846 - 1087964
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| || |||||| ||||||||| ||  ||||||||||||||  ||||| ||||| |||    
T  1087846 agagtatgtttgaatgaggtaattgagaaattttaaagaatttagaattttaggaaatttaaatgattcaattaaattacttttatttctaaatactttt 1087945  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  1087946 gtttggatggagtaataaa 1087964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 29611875 - 29611746
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||| |||||||||       
T  29611875 ctaagagtgtgtttggatgtggtaattggaaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatttctcaat--- 29611779  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||||  ||| |||| || |||||||    
T  29611778 tttgtttggatgaagtaataaaaaaattcattg 29611746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 13145131 - 13145015
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||| ||||||||||| |||| ||||||||||||| |||| |||||||||||||| || |||||||||| ||||  ||||||||||  |||||    
T  13145131 agtgtgtttgggtgaggtaattgggaaaatttaaagaatttaaaattctaggcaatttaaatgatttaattaaattccttttatttctcaatatttttgt 13145032  T
Q  301 ttggatggtgtagtaaa 317  Q
    |||| ||| ||| ||||    
T  13145031 ttgggtggagtaataaa 13145015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 44890151 - 44890029
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatac 294  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||| |||| |||| |||| |||||||  ||||||||| ||||| ||  | ||||     
T  44890151 actaagagtgtgtttggataaggtaattgagaaattttgaaaaatttagaattctaggtaattcaaattattaaattaaattgctttcattcttaaatat 44890052  T
Q  295 ctttgtttggatggtgtagtaaa 317  Q
      |||||||||||| ||||||||    
T  44890051 tattgtttggatggagtagtaaa 44890029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 9983200 - 9983149
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9983200 ctaagagtgtgtttggatgaggtaattgagaaattttgaagaatttagaatt 9983149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 36103308 - 36103250
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  36103308 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 36103250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 24051824 - 24051703
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||||||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| ||||| ||| | ||||      
T  24051824 ctaagagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcatttttaaatatt 24051725  T
Q  296 tttgtttggatggtgtagtaaa 317  Q
     |||||||||||| ||| ||||    
T  24051724 attgtttggatggagtaataaa 24051703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 31976122 - 31976247
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    |||||||||||||||||||||| |||   | ||||||||| |||| |||| |||| |||| ||  ||||||||| ||||  ||||||||||| |||||||    
T  31976122 tgtgtttggatgaggtaattgaaaaaaaattaagaatttagaattctaggtaattcaaatgattcaattaaattgcttttatttctcaatacttttgttt 31976221  T
Q  303 ggatggtgtagtaaagaatttcattg 328  Q
    ||| || ||||| || ||||| ||||    
T  31976222 ggacggagtagtcaaaaattttattg 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 30444806 - 30444866
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||| ||||||  |||||||||||||||||| |||| |||||||||||    
T  30444806 agagtgtgtttggatgaagtaatttggaaattttaaagaatttaaaattctaggcaattta 30444866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 43168204 - 43168100
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    ||||||||||||||  ||||||    |||||||||||||| |||| ||| |||||||||| || ||||||||||| |||| ||||| ||||| |||||||    
T  43168204 tgtgtttggatgagtcaattgaatttttttaaagaatttagaattctagacaatttaaataatttaattaaattattttcatttcttaatacttttgttt 43168105  T
Q  303 ggatg 307  Q
     ||||    
T  43168104 tgatg 43168100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 7669185 - 7669142
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaattta 243  Q
    |||||||||||||||| |||||||||||||||| ||||||||||    
T  7669185 agagtgtgtttggatggggtaattgagaaatttcaaagaattta 7669142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 23011944 - 23011885
Alignment:
Q  200 agagtgtgttt-ggatgaggtaattgagaaattttaaagaatttataatt-taggcaatt 257  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  23011944 agagtgtgttttggatgaggtaatttagaaattttaaagaatttaaaattctaggcaatt 23011885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 7079825 - 7079790
Alignment:
Q  213 atgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7079825 atgaggtaattgagaaattttaaagaatttaaaatt 7079790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 13823497 - 13823458
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaa 239  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  13823497 agagtgtgtttggatgaagtaattgagaaattttgaagaa 13823458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 28324221 - 28324300
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaatt 276  Q
    ||||||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  |||||||||    
T  28324221 taagagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaatt 28324300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 34390489 - 34390459
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattt 232  Q
    |||||||||||||||||||||||||||||||    
T  34390489 agtgtgtttggatgaggtaattgagaaattt 34390459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 6421829 - 6421788
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatt 241  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||    
T  6421829 agagtttgtttagatgaggtaatcgagaaattttaaagaatt 6421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 8049724 - 8049683
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaattta 243  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  8049724 agtgtgtttggatgaggtaattgaaattttttaaagaattta 8049683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 8469933 - 8469900
Alignment:
Q  215 gaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||||||||||||||||||||| ||||    
T  8469933 gaggtaattgagaaattttaaagaatttagaatt 8469900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 15718636 - 15718587
Alignment:
Q  268 aattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaa 317  Q
    |||| |||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  15718636 aatttaattactttcatttctcaatacttttgtttggatggagtaataaa 15718587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 24045511 - 24045430
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    ||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| |||||    
T  24045511 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttc 24045430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 26520509 - 26520546
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaaga 238  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  26520509 gagtgtgtttggatggggtaattgagaaattttgaaga 26520546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 28190231 - 28190360
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||| |||| ||||| |||||   |||||| |||||| ||| |||| || ||||||||||| ||  |||||||||||| |  ||||||||||  |||    
T  28190231 agagtgtatttgaatgagataattcgaaaatttgaaagaacttagaattctacgcaatttaaatgattcaattaaattactcttatttctcaatattttt 28190330  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  | | |||| ||||||||||    
T  28190331 gtttggatgaagcattaaaaaatttcattg 28190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 15719476 - 15719420
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatt 257  Q
    |||||||||| |  ||||||||||||||||||||| |||||| || |||||||||||    
T  15719476 agtgtgtttgaacaaggtaattgagaaattttaaaaaatttaaaattttaggcaatt 15719420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 36624810 - 36624858
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||| |||| | ||||||||||||||| ||||||||| ||||    
T  36624810 agagtgtgtttagatgggataattgagaaattttgaagaatttagaatt 36624858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 197 - 332
Target Start/End: Original strand, 24241708 - 24241844
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||| ||  ||||||||||||||| ||||||||||      
T  24241708 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaatcctagacaatttaaatgattcaattaaattactttcatttctcaatatt 24241807  T
Q  296 tttgtttggatggtgtagtaaagaatttcattggcat 332  Q
    ||||||||||||| | | |||| ||||||||||||||    
T  24241808 tttgtttggatggagaaataaaaaatttcattggcat 24241844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 53469935 - 53470059
Alignment:
Q  184 atattcaaataaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||  |||||||||||||||    
T  53469935 atattcaagtaatctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggtaatttaaatgattcaattaaattactttc 53470034  T
Q  283 gtttctcaatacctttgtttggatg 307  Q
     ||||||||| | ||||||||||||    
T  53470035 atttctcaattcttttgtttggatg 53470059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 48948136 - 48948023
Alignment:
Q  195 aactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaata 293  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| |||||||||     
T  48948136 aactaagagtatgtttggatgaggtaattgaaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaatt 48948037  T
Q  294 cctttgtttggatg 307  Q
    | ||||||||||||    
T  48948036 cttttgtttggatg 48948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 36397508 - 36397640
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||  ||||||||||||||| |||||||||       
T  36397508 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagacaatttaaatgattcaattaaattactttcatttctcaatttt 36397607  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||||  ||| |||| || |||||||    
T  36397608 tttgtttggatgaagtaataaaaaaattcattg 36397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 328
Target Start/End: Original strand, 671182 - 671317
Alignment:
Q  194 aaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||| ||  ||||||||||||||| |||||||||    
T  671182 aaacttagagtgtgtttggatgaggtaattgagaaattttaaagaatataaaattatagacaatttaaatgattcaattaaattactttcatttctcaat 671281  T
Q  293 acctttgtttggatggtgtagtaaagaatttcattg 328  Q
     | ||||||||||||  ||| |||| || |||||||    
T  671282 tcttttgtttggatgaagtaataaaaaaattcattg 671317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 34089125 - 34089017
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| |||||||||   |||    
T  34089125 agagtgtgtttggatgatgtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattttttt 34089026  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  34089025 gtttggatg 34089017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 28181800 - 28181907
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    |||||||||||| ||||||||||  ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||||| |||||    
T  28181800 agtgtgtttggacgaggtaattggaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaatacttttgt 28181899  T
Q  301 ttggatgg 308  Q
    ||||||||    
T  28181900 ttggatgg 28181907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 43863486 - 43863593
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||| ||  |||||||||| |||| ||||||||| | |||    
T  43863486 agagtgtgtttggacgaggtaattgagaaattttaaagaatttagaattctaggtaatttaaatgattcaattaaattattttcatttctcaattctttt 43863585  T
Q  299 gtttggat 306  Q
    ||||||||    
T  43863586 gtttggat 43863593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 7977100 - 7976991
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||  |||||||||||||| ||  |||| |||||||||| ||||||||||  |||    
T  7977100 agagtgtgtttggatgaggtaattgggaaattttaaagaatttcgaatcctaggcaatttaaatgattcaattcaattactttcatttctcaatattttt 7977001  T
Q  299 gtttggatgg 308  Q
    ||||||||||    
T  7977000 gtttggatgg 7976991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 35279470 - 35279599
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| |||| || | ||||||||| ||  ||||||||||||||| |||||||||   |||    
T  35279470 agagtgtgtttggatgaggcaattgggaaattttaaagaatttagaattctaagtaatttaaatgattcaattaaattactttcatttctcaattttttt 35279569  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  35279570 gtttggatgaagtaataaaaaaattcattg 35279599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 21307111 - 21307239
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || |||||  |||| |||| ||  ||||||| | ||||| ||||||||||  |||    
T  21307111 agagtgtgtttggatgaggtaattgggaaattttaaagaatttagaattttagataattgaaatgattcaattaaaatgctttcatttctcaatattttt 21307210  T
Q  299 gtttggatggtgtagtaaagaatttcatt 327  Q
    |||||||||| ||| ||||  ||||||||    
T  21307211 gtttggatggagtaataaaagatttcatt 21307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 34396148 - 34396270
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    |||||||||||||||||||||  |||||||||||| |||| |||| |||||||||||||| ||  |||||||||  |||| ||||||||||| |||||||    
T  34396148 tgtgtttggatgaggtaattggaaaattttaaagagtttaaaattctaggcaatttaaatgattcaattaaattcttttcatttctcaatacttttgttt 34396247  T
Q  303 ggatggtgtagtaaagaatttca 325  Q
    || | | ||| |||| |||||||    
T  34396248 gggtagagtaataaaaaatttca 34396270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 48824637 - 48824742
Alignment:
Q  203 gtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtt 301  Q
    |||||||||||| |||||||||  ||||||||||||||||| || |||||||||||||||| ||  |||||||||| |||| ||| |||||||  |||||    
T  48824637 gtgtgtttggataaggtaattggaaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattattttcatttatcaatactcttgtt 48824736  T
Q  302 tggatg 307  Q
    ||||||    
T  48824737 tggatg 48824742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 52527559 - 52527430
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||  |||||||||| |||||| |||| ||   ||||||||| ||  ||||||||||||||  ||| | ||||| |||    
T  52527559 agagtgtgtttggatgaggtaattggaaaattttaaaaaatttagaattctaaaaaatttaaatgattcaattaaattacttttatttttaaatactttt 52527460  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||| ||| |||| ||||||||||    
T  52527459 gtttggatggagtaataaaaaatttcattg 52527430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 21731468 - 21731361
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||| |||||| | |||||||| |||| |||||||||||||| ||  ||||||||||||||  ||| |||||   |||    
T  21731468 agagtgtgtttggatgaggtaattgataaatttaagagaatttaaaattctaggcaatttaaataattcaattaaattacttttatttttcaattttttt 21731369  T
Q  299 gtttggat 306  Q
    ||||||||    
T  21731368 gtttggat 21731361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 300
Target Start/End: Complemental strand, 28092215 - 28092112
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatttaggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||  |||||||||||| ||||||  ||||||||||||||||| | | ||||||||||| || ||  ||||||||| ||||| ||||||||||| |    
T  28092215 ctaagagaatgtttggatgagctaattggaaaattttaaagaatttaaattctaggcaatttatatgattcaattaaatttctttcatttctcaatactt 28092116  T
Q  297 ttgt 300  Q
    ||||    
T  28092115 ttgt 28092112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 38506484 - 38506591
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||| |||| |||||||  ||||||||||||||||| || |||||||||||||||| ||  | ||||| |  |||| ||||||||||| |||    
T  38506484 agagtgtgtttgaatgaagtaattggaaaattttaaagaatttagaattttaggcaatttaaatgattcatttaaaatgttttcatttctcaatactttt 38506583  T
Q  299 gtttggat 306  Q
    ||||||||    
T  38506584 gtttggat 38506591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 19476028 - 19475966
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  19476028 taagagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 19475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 2105279 - 2105202
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaatt 276  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||| |||| ||||||||| ||  |||||||||    
T  2105279 agagtgtgtttggatggagtaattgagaaattttgaagaatttataattctaggtaatttaaatgattcaattaaatt 2105202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 50168190 - 50168231
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50168190 aagagtgtgtttggatgaggtaattgagaaattttaaagaat 50168231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 53129434 - 53129534
Alignment:
Q  208 tttggatgaggtaattgagaaattttaaagaatttataattta-ggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggat 306  Q
    |||||| |||||||||||    |||||| ||||||| |||||| |||||||||||| ||  ||||||||||||||| ||||||||| | |||||||||||    
T  53129434 tttggacgaggtaattgaatttttttaaggaatttagaatttaaggcaatttaaatgattcaattaaattactttcatttctcaattcttttgtttggat 53129533  T
Q  307 g 307  Q
    |    
T  53129534 g 53129534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 8762338 - 8762276
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||||   ||||||||||||||||| |||| |||||||||||    
T  8762338 taagagtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctaggcaattta 8762276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 36636367 - 36636285
Alignment:
Q  209 ttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctca 290  Q
    ||||||| | ||||||||||||||||||||| |||||||| ||| ||| |||||||||  |||| |||||||||| |||||||    
T  36636367 ttggatgcgataattgagaaattttaaagaaattataattctagacaaattaaattattcaatttaattactttcatttctca 36636285  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 645732 - 645853
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||| ||| |||||||||||||||||||  ||||||||||||||||| ||||  | | |||| |||| ||   ||||||||| |||| |||||||||||     
T  645732 ctaatagtatgtttggatgaggtaattggaaaattttaaagaatttagaattccaagtaattcaaatgattcgattaaattattttcatttctcaatact 645831  T
Q  296 tttgtttggatggtgtagtaaa 317  Q
    |||||||| |||| ||| ||||    
T  645832 tttgtttgtatggagtaataaa 645853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 33871764 - 33871824
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||| ||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  33871764 agagtgtgtgtggatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 33871824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 47714486 - 47714426
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||  |||||||||||||||||  |||| |||||||||||    
T  47714486 agagtgtgtttggatgaggtaatttggaaattttaaagaatttcaaattctaggcaattta 47714426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 37054948 - 37054862
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    |||||||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| |||||    
T  37054948 ctaagagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttc 37054862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 42005473 - 42005591
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| ||||| ||  | |||||  ||    
T  42005473 agagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcttaaatactatt 42005572  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  42005573 gtttggatggagtaataaa 42005591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 47767984 - 47767927
Alignment:
Q  191 aataaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||| |||||||||||||||||||  ||| |||||||||||| ||||||||| ||||    
T  47767984 aataacctaagagtgtgtttggatggagtatttgagaaattttgaagaatttagaatt 47767927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 328
Target Start/End: Original strand, 6836590 - 6836689
Alignment:
Q  230 ttttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||||| ||||| |||||||| |||| ||  ||||||| | ||||| ||| ||||||  ||||||||||||| | | |||| ||||||||||    
T  6836590 ttttaaagaatttagaattttaggcaattcaaatgattcaattaaaatgctttcatttatcaatatttttgtttggatggagcaataaaaaatttcattg 6836689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 44288022 - 44288073
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    |||||||||||||||| |||||||||  |||||||| || ||||||||||||    
T  44288022 taagagtgtgtttggacgaggtaattaggaaattttgaaaaatttataattt 44288073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 46707139 - 46707044
Alignment:
Q  235 aagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatac-ctttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||| |||| || ||||||||||||||  ||||||||||||||| ||| |||||||  ||| |||||| || ||| |||| ||||||||||    
T  46707139 aagaatttagaattctaagcaatttaaattattcaattaaattactttcatttttcaatactttttatttggacggagtaataaaaaatttcattg 46707044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 54761426 - 54761475
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||||||||||||||||||||||   |||||||| |||||||| |||||    
T  54761426 agagtgtgtttggatgaggtaatttgaaaattttacagaatttaaaattt 54761475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 35047197 - 35047330
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatac 294  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| |    
T  35047197 actaagagtgtgtttggatggggtaattgagaaattttaaagaatttaaaattctaggcaatttaaatgattcaattaaattactttcatttctcaattc 35047296  T
Q  295 ctttgtttggatggtgtagtaaagaatttcattg 328  Q
     ||||||||||||  ||| |||| || |||||||    
T  35047297 ttttgtttggatgaagtaataaaaaaattcattg 35047330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 13018297 - 13018165
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||||||| |     
T  13018297 ctaagagtgtgtttggatgaggtaattgagaaattataaagaatttaaaattctaggtaatttaaataattcaattaaattactttcatttctcaattct 13018198  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||||| ||| |||| || |||||||    
T  13018197 tttgtttggatggagtaataaaaaaattcattg 13018165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 327
Target Start/End: Complemental strand, 21505002 - 21504871
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||  | |||||||||||||| | ||||||||||      
T  21505002 ctaaaagtgtgtttggatgaggtaattgggaaattttaaagaatttagaattctaagcaatttaaatgttttaattaaattacttgcatttctcaataat 21504903  T
Q  296 tttgtttggatggtgtagtaaagaatttcatt 327  Q
    ||||||||||||| |||||||| |||||||||    
T  21504902 tttgtttggatggagtagtaaaaaatttcatt 21504871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 1583332 - 1583461
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||   |||||||||||||| ||||||||| | |||    
T  1583332 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattccattaaattactttcatttctcaattctttt 1583431  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  1583432 gtttggatgaagtaataaaaaaattcattg 1583461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 19231017 - 19231145
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||||| |||    
T  19231017 agagtgtgtttggatgaggtaattgagaaattttaaagaa-ttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaatactttt 19231115  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  | | |||| ||||||||||    
T  19231116 gtttggatgaagaaataaaaaatttcattg 19231145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 44256183 - 44256054
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  44256183 agagtatgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctttt 44256084  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  44256083 gtttggatgaagtaataaaaaaattcattg 44256054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 769581 - 769473
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||| ||||| | |||    
T  769581 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttttcaattctttt 769482  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  769481 gtttggatg 769473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 7309436 - 7309544
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  7309436 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaagcaatttaaatgattcaattaaattactttcatttctcaattctttt 7309535  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  7309536 gtttggatg 7309544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 33188789 - 33188897
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||| ||||| | |||    
T  33188789 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttttcaattctttt 33188888  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  33188889 gtttggatg 33188897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 328
Target Start/End: Original strand, 8735963 - 8736094
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||  || ||||||||||| ||  ||||||||||||||| ||||||||||  |    
T  8735963 taagagtgtgtttggatgaggtaattgggaaattttaaagaatttagaatcctaagcaatttaaatgattcaattaaattactttcatttctcaatattt 8736062  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||| | | |||| ||||||||||    
T  8736063 ttgtttggatggagaaataaaaaatttcattg 8736094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 3092795 - 3092677
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||  ||||||||||||||  ||||| ||||| |||    
T  3092795 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggaaatttaaatgattcaattaaattacttttatttctaaatactttt 3092696  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  3092695 gtttggatggagtaataaa 3092677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 39630775 - 39630646
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  39630775 agagtgtgtttggatgaggtaattgagaaattttaaaaaatttaaaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctttt 39630676  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
     ||||||||  ||| |||| || |||||||    
T  39630675 atttggatgaagtaataaaaaaattcattg 39630646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 325
Target Start/End: Original strand, 14306362 - 14306490
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||  |  ||||||| | ||||| ||||||||||| |    
T  14306362 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagacaattaaaatggttcaattaaaatgctttcatttctcaatactt 14306461  T
Q  297 ttgtttggatggtgtagtaaagaatttca 325  Q
    |||||||||||| ||| |||| |||||||    
T  14306462 ttgtttggatggagtaataaaaaatttca 14306490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 2925206 - 2925071
Alignment:
Q  194 aaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||| ||  | ||||| |  |||| |||||||||    
T  2925206 aaacttagagtgtgtttggatgaagtaattgggaaattttaaagaatttagaattctaggcaatttaaatgattcatttaaaatgttttcatttctcaat 2925107  T
Q  293 acctttgtttggatggtgtagtaaagaatttcattg 328  Q
    || ||||||| ||||| ||| | || ||||||||||    
T  2925106 acttttgttttgatggagtaatcaaaaatttcattg 2925071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 19193746 - 19193861
Alignment:
Q  203 gtgtgtttggatgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtt 301  Q
    ||||||||||||||||||||||  |||||||||| || ||| ||||| |||||||||||||  | | |||||||||||||| ||||||||||| ||||||    
T  19193746 gtgtgtttggatgaggtaattggaaaattttaaaaaaattaaaattttaggcaatttaaatgttttgattaaattactttcatttctcaatacttttgtt 19193845  T
Q  302 tggatggtgtagtaaa 317  Q
    ||||||| ||| ||||    
T  19193846 tggatggagtaataaa 19193861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 328
Target Start/End: Original strand, 28021704 - 28021835
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||| | | ||||| |||| ||  ||||||| | ||||  ||||||||||| |    
T  28021704 taagagtgtgtttggatgagctaattgagaaattttaaagaatttagaattcttgacaattcaaatgattcaattaaaatgcttttatttctcaatactt 28021803  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||  ||| |||| ||||||||||    
T  28021804 ttgtttggatgtagtaataaaaaatttcattg 28021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 17906191 - 17906073
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |||| |||  ||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  17906191 agagtgtgtttggatgaggtaattgaaaaattataaagaatttaaaattatagataatttaaataattcaattaaattactttcatttctcaattctttt 17906092  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||| ||||| ||| ||||    
T  17906091 gtttagatggagtaataaa 17906073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 32839185 - 32839306
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||  ||||||||| ||||| ||  | ||||      
T  32839185 ctaagagtgtgtttagatgaggtaattgagaaattttaaagaatttaaaattctaggcaattcaaatgattcaattaaattgctttcattcataaatatt 32839284  T
Q  296 tttgtttggatggtgtagtaaa 317  Q
     |||||||||||||||| ||||    
T  32839285 attgtttggatggtgtaataaa 32839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 11141852 - 11141725
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||| ||   ||||||||| |||| ||||| ||| | |||||    
T  11141852 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaatcctagacaatttaaatgattccattaaattaatttcatttcttaattcttttgt 11141753  T
Q  301 ttggatggtgtagtaaagaatttcattg 328  Q
    |||||||  ||| |||| || |||||||    
T  11141752 ttggatgaagtaataaaaaaattcattg 11141725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 41585194 - 41585323
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||| | | |||||||||| ||  | ||||||||||||| |||||||||   |||    
T  41585194 agagtgtctttggatgaggtaattgataaattttaaagaatttagaattcttgacaatttaaatgattcatttaaattactttcatttctcaattatttt 41585293  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  41585294 gtttggatgaagtaataaaaaaattcattg 41585323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 11595328 - 11595225
Alignment:
Q  226 gaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaagaatttc 324  Q
    |||||||||||||||||| |||| || | ||||||||| ||  ||||||||||||||| ||||||||||| ||||||||| ||| ||| |||| || |||    
T  11595328 gaaattttaaagaatttagaattctaagtaatttaaatgattcaattaaattactttcatttctcaatacttttgtttggttggagtattaaaaaaattc 11595229  T
Q  325 attg 328  Q
    ||||    
T  11595228 attg 11595225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 11607230 - 11607151
Alignment:
Q  226 gaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttgg 304  Q
    |||||||||||||||||| |||| || | ||||||||| ||  ||||||||||||||| ||||||||||| |||||||||    
T  11607230 gaaattttaaagaatttagaattctaagtaatttaaatgattcaattaaattactttcatttctcaatacttttgtttgg 11607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 19072380 - 19072337
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaattta 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  19072380 agagtgtgtttggatgagataattgagaaattttaaagaattta 19072337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 7611421 - 7611528
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||||||  |||||||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| ||||| || || ||||   ||||    
T  7611421 agtgtgtttggatggagtaattgagaaattttgaagaatttaaaattctaggtaattcaaatgattcaattaaattgctttcattcctaaatattattgt 7611520  T
Q  301 ttggatgg 308  Q
    ||||||||    
T  7611521 ttggatgg 7611528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 30698830 - 30698747
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttc 282  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||| || |||||| |||| |||| || |||||||||| |||||    
T  30698830 agagtgtgtttggatggagtatttgagaaattttgaagaatttagaattttaggtaattcaaatgatttaattaaattgctttc 30698747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 31941507 - 31941428
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaatt 276  Q
    ||||||||||||| || ||||||||||| ||||||| ||||||||| |||| ||| ||||| |||||||  |||||||||    
T  31941507 taagagtgtgttttgacgaggtaattgataaattttcaagaatttagaattatagacaattcaaattattcaattaaatt 31941428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 7684654 - 7684605
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||||||||||||| |||||||| | ||||||||||||||||| |||||    
T  7684654 agagtgtgtttggataaggtaatttaaaaattttaaagaatttaaaattt 7684605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 10480329 - 10480269
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    |||||||| |||||||||||||||   ||||||||||||||||| |||| |||||||||||    
T  10480329 agagtgtgcttggatgaggtaatttgaaaattttaaagaatttaaaattctaggcaattta 10480269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 6749627 - 6749576
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||  |||||||||| ||||||||||||||||| ||||||||| ||||    
T  6749627 ctaagagcttgtttggatggggtaattgagaaattttgaagaatttagaatt 6749576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 11794108 - 11794057
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||||| ||||||||   ||||||||||||||||| ||||    
T  11794108 ctaagagtgtgtttggattaggtaatttgaaaattttaaagaatttaaaatt 11794057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 7167185 - 7167271
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    |||| ||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| |||||    
T  7167185 ctaaaagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttc 7167271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 32839714 - 32839763
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||| ||||||| || ||||||||||||||||| ||||||||| ||||    
T  32839714 aagagtttgtttgggtggggtaattgagaaattttgaagaatttagaatt 32839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 44205193 - 44205320
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||  |||||||||| |||| ||||||||| |||| ||| ||| |||||| ||   |||| |||| ||||  ||||||||| ||||    
T  44205193 agagtgtgtttggatgatataattgagaattttttaagaatttagaattctagacaacttaaatgatacgattagattattttc-attctcaata-cttt 44205290  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
     ||||||||  ||| |||| ||||||||||    
T  44205291 ttttggatgaagtaataaaaaatttcattg 44205320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 11532118 - 11532174
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    |||||||||||||| |||||  ||| |||||||||||||| |||| |||||||||||    
T  11532118 tgtgtttggatgagataatttggaagttttaaagaatttaaaattctaggcaattta 11532174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 45094006 - 45094050
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatt 241  Q
    ||||||||||||||| ||| ||||||| ||||||||| |||||||    
T  45094006 ctaagagtgtgtttgaatggggtaattaagaaattttgaagaatt 45094050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 33146632 - 33146501
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||  |||||| |||||||| ||||||||||  |    
T  33146632 taagagtgtgtttggatgaggtagttgagaaatttcaaagaatttagaatcttaggcaatttaaataattcaattaagttactttcatttctcaatattt 33146533  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||| | | |||||||||||||||    
T  33146532 ttgtttggatggagaaataaagaatttcattg 33146501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 927850 - 927721
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||| || |||||||||||||||| ||||||||| | |||    
T  927850 agagtgtgtttgaatgaggtaattgagaaattttaaagaatttagaattctagacaatttaaatgatttaattaaattactttcatttctcaattctttt 927751  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  927750 gtttggatgaagtaataaaaaaattcattg 927721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 17541881 - 17542013
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||| ||  ||||||||||||||  ||||||||||      
T  17541881 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttagaatcctagacaatttaaatgattcaattaaattactttaatttctcaatatt 17541980  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||||| | | |||| ||||||||||    
T  17541981 tttgtttggatggagaaataaaaaatttcattg 17542013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 41761744 - 41761852
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||| ||| ||||| | |||    
T  41761744 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatttttcaattctttt 41761843  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  41761844 gtttggatg 41761852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 327
Target Start/End: Complemental strand, 12480452 - 12480321
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||| || ||||||||||| ||  ||||||||||||||| |||||||||||     
T  12480452 ctaagagtgtgtttggatgaggtaattggaaaattttaaagaatttagaattctaagcaatttaaatgattcaattaaattactttcatttctcaatact 12480353  T
Q  296 tttgtttggatggtgtagtaaagaatttcatt 327  Q
    |||||| |||||  ||| |||| |||||||||    
T  12480352 tttgttaggatgaagtaataaaaaatttcatt 12480321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 32249649 - 32249767
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||||||||   ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||  ||||||||||| |||    
T  32249649 agagtgtgtttggatgaggtaatttgaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattacttttatttctcaatactttt 32249748  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  32249749 gtttggatggagtaataaa 32249767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 28490456 - 28490326
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaatttt-aaagaatttataattta-ggcaatttaaattatgtaattaaattactttcgtttctcaatacctt 297  Q
    |||||||||||||||||||||||||| |  |||| |||||||||| |||| | |||||||||||| ||  ||||||||||||||| ||||||||||| ||    
T  28490456 agagtgtgtttggatgaggtaattgaaatttttttaaagaatttaaaattcaaggcaatttaaatgattcaattaaattactttcatttctcaatacttt 28490357  T
Q  298 tgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||||  || |||| ||||||||||    
T  28490356 tgtttggatggaataataaaaaatttcattg 28490326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 22304734 - 22304843
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||| |||  |||||||||||||| ||  ||||||||||||||| ||||||||||  |||    
T  22304734 agagtgtattttgatgaggtaattgggaaattttaaagaatttagaatcctaggcaatttaaatgattcaattaaattactttcatttctcaatattttt 22304833  T
Q  299 gtttggatgg 308  Q
    ||||||||||    
T  22304834 gtttggatgg 22304843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 1209213 - 1209086
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||||   ||||||||||||||||||||||| || ||||| |||||||||| ||  ||||||||||||||| ||| ||||||| |||    
T  1209213 agagtgtgtttggatgagc--attgagaaattttaaagaatttagaaatttagacaatttaaatgattcaattaaattactttcatttttcaatactttt 1209116  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    ||||| |||  ||| |||| ||||||||||    
T  1209115 gtttgaatgaagtaataaaaaatttcattg 1209086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 308
Target Start/End: Original strand, 6771822 - 6771932
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctt 297  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| |||| || |||||| |||| ||  |||||||||| |||| ||||||||||| |     
T  6771822 aagagtgtgtttggatgagttaattgggaaattttaaagaatttagaattctatgcaattcaaatgattcaattaaattattttcatttctcaatacttc 6771921  T
Q  298 tgtttggatgg 308  Q
    |||||||||||    
T  6771922 tgtttggatgg 6771932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 22304735 - 22304649
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||  |||||||||||||||    
T  22304735 ctaagtgtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagacaatttaaatgattcaattaaattactttc 22304649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 28490009 - 28489884
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||||||||||||||   ||||||||| ||||||| |||  |||||||||||||| ||  ||||||||||| ||| ||||||||||  |||||    
T  28490009 agtgtgtttggatgaggtaattagaaaattttaaggaatttagaatcctaggcaatttaaatgattcaattaaattacgttcatttctcaatatttttgt 28489910  T
Q  301 ttggatggtgtagtaaagaatttcat 326  Q
    |||||||| | | |||| ||||||||    
T  28489909 ttggatggagaaataaaaaatttcat 28489884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 33995444 - 33995573
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||| || ||||||||||| |||| ||  ||||||| | ||| | ||||||| ||| |||    
T  33995444 agagtgtgtttggatgatgtaattgacaaattttaaagaaattagaattttaggcaattcaaatgattcaattaaaatgcttccatttctcattactttt 33995543  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
     ||||||||| ||| |||| ||||||||||    
T  33995544 ttttggatggagtaataaaaaatttcattg 33995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 14835338 - 14835211
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||||| | ||||||| |||||||||||||||||| || |||||| ||||||||| ||  ||||||| || | || ||||||||||| |||||    
T  14835338 agtgtgtttggataaagtaattgggaaattttaaagaatttagaagtttaggtaatttaaatgattcaattaaaatattatcatttctcaatacttttgt 14835239  T
Q  301 ttggatggtgtagtaaagaatttcattg 328  Q
    |||||||  ||| || | ||||||||||    
T  14835238 ttggatgtagtaatataaaatttcattg 14835211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 15579996 - 15580123
Alignment:
Q  198 taagagtgtgtttggatgagg-taattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatac- 294  Q
    ||||||||||||||||||||| |||||  ||||||||||| |||||| |||| ||| |||||||||| ||  ||||||||| ||||| |||||||||||     
T  15579996 taagagtgtgtttggatgagggtaattaggaaattttaaaaaatttaaaattctagacaatttaaatgattcaattaaattcctttcatttctcaatact 15580095  T
Q  295 ctttgtttggatggtgtagtaaagaatt 322  Q
     ||||||||||||| ||| |||| ||||    
T  15580096 ttttgtttggatggagtaataaaaaatt 15580123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 13390961 - 13391078
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctt 297  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||             ||||||||| ||||||||||| ||    
T  13390961 aagagtgtgtttggatgaggtaattgggaaattttaaagaatttagaattctaagcaatttaa-------------attactttcatttctcaatacttt 13391047  T
Q  298 tgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||||| ||| |||| ||||||||||    
T  13391048 tgtttggatggagtactaaaaaatttcattg 13391078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 37091135 - 37091007
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttg 299  Q
    ||||||||||||||||||||||||  |||| |||||||||||| || | |||| |||| |||| ||  ||||||||||||||| ||||| ||||| | ||    
T  37091135 gagtgtgtttggatgaggtaattggtaaatcttaaagaatttagaactctaggtaattaaaatgattcaattaaattactttcatttcttaatacttatg 37091036  T
Q  300 tttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||  ||| |||  ||||||||||    
T  37091035 tttggatgaagtaataattaatttcattg 37091007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 8255506 - 8255443
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaat 262  Q
    ||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  8255506 agagtatgtttggatgagataattgagaaattttgaagaatttataattttaggcaatttaaat 8255443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 8264996 - 8264877
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaattt-ataatttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctt 297  Q
    ||||||||||||||||||| |||||||    ||||||||||||| ||| | || ||||||||||| ||  |||||||||||| || ||| ||||||| ||    
T  8264996 aagagtgtgtttggatgagctaattgaatttttttaaagaattttatattctaagcaatttaaatgattcaattaaattactctcatttttcaatacttt 8264897  T
Q  298 tgtttggatggtgtagtaaa 317  Q
    ||||||||||| ||| ||||    
T  8264896 tgtttggatggagtaataaa 8264877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 35111763 - 35111712
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35111763 ctaagagtgtgtttggatggggtaattgagaaattttaaagaatttagaatt 35111712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 25935151 - 25935209
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatt 257  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  25935151 agagtgtgtttggatgaggtaatttagaaattttaaagaatttaaaattctaggcaatt 25935209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 15270421 - 15270546
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||| |||| |||| |||| ||  ||||||| | ||||| ||||||||||  |||||||    
T  15270421 tgtgtttgaatgaggtaattggaaaattttaaagaatttagaattctaggtaattgaaatgattcaattaaaatgctttcatttctcaatatttttgttt 15270520  T
Q  303 ggatggtgtagtaaagaatttcattg 328  Q
    |||| | ||| ||||  |||||||||    
T  15270521 ggatagagtaataaaagatttcattg 15270546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 12064318 - 12064378
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  12064318 agagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 12064378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 20320525 - 20320589
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||| |||| |||||||||||    
T  20320525 actaagagtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctaggcaattta 20320589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 30519475 - 30519379
Alignment:
Q  228 aattttaaagaatttataatttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaagaatttc 324  Q
    |||||||||||||||| | |||||||||||||||| ||   |||||||| ||||| ||| ||||||| ||||||||| ||| ||| |||| ||||||    
T  30519475 aattttaaagaatttaaattttaggcaatttaaatgattcgattaaatttctttcatttttcaatacttttgtttgggtggagtaataaaaaatttc 30519379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 30559815 - 30559719
Alignment:
Q  228 aattttaaagaatttataatttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaagaatttc 324  Q
    |||||||||||||||| | |||||||||||||||| ||   |||||||| ||||| ||| ||||||| ||||||||| ||| ||| |||| ||||||    
T  30559815 aattttaaagaatttaaattttaggcaatttaaatgattcgattaaatttctttcatttttcaatacttttgtttgggtggagtaataaaaaatttc 30559719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 37241163 - 37241277
Alignment:
Q  204 tgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgttt 302  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||| |||  |||| |||||||  |||||||||  |||| ||||| ||||   ||||||    
T  37241163 tgtgtttggatggggtaattgagaaattttgaagaatttagaattctagttaattcaaattattcaattaaattgttttcatttctaaatattattgttt 37241262  T
Q  303 ggatggtgtagtaaa 317  Q
    |||||| ||| ||||    
T  37241263 ggatggagtaataaa 37241277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 40089412 - 40089476
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaatt 263  Q
    ||||||||||||||||||||||||  |||||||||||||||||| | |  |||||||||||||||    
T  40089412 agagtgtgtttggatgaggtaattaggaaattttaaagaatttagattcctaggcaatttaaatt 40089476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 38178813 - 38178868
Alignment:
Q  208 tttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaat 262  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  38178813 tttggatgaggtaattggaaaattttaaagaatttagaattataggcaatttaaat 38178868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 38206037 - 38206092
Alignment:
Q  208 tttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaat 262  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  38206037 tttggatgaggtaattggaaaattttaaagaatttagaattataggcaatttaaat 38206092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 10315196 - 10315150
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  10315196 agtgtgtttggatggggtaattgagaaattttgaagaatttagaatt 10315150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 19533769 - 19533827
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    |||||||||| |||||||||||  |||||||||||||||||| |||| |||||||||||    
T  19533769 agtgtgtttgaatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 19533827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 22303385 - 22303471
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    |||||||||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| |||||    
T  22303385 ctaagagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttc 22303471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 17492691 - 17492818
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaa-tttataatttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||||||||||||||||   |||||||||| || |||| ||| || |||||| |||||||  ||||| |||   ||| ||||| ||||  |||||    
T  17492691 agtgtgtttggatgaggtaattagaaaattttaaaaaattttagaatataagcaattcaaattattaaattacattgtcttcatttctaaatatttttgt 17492790  T
Q  301 ttggatggtgtagtaaagaatttcattg 328  Q
    |||| ||| ||| |||| ||||||||||    
T  17492791 ttggctggagtaataaaaaatttcattg 17492818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 32317222 - 32317174
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| |||||    
T  32317222 agagagtgtttggattaggtaattga-aaattttaaagaatttaaaattt 32317174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 3407 - 3278
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctt 297  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||  ||||||||| ||  ||||||||||||||| ||||||||||| ||    
T  3407 aagagtgtctttggatgaggtaattgagaaattttaaagaatttagaattttagttaatttaaatgattcaattaaattactttcatttctcaatacttt 3308  T
Q  298 tgtttggatggtgtagtaaagaatttcatt 327  Q
    ||||||||||  ||| |||| |||||||||    
T  3307 tgtttggatgaagtaataaaaaatttcatt 3278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 946929 - 946821
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||| ||| | |||    
T  946929 agagtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctaaattctttt 946830  T
Q  299 gtttggatg 307  Q
    |||||||||    
T  946829 gtttggatg 946821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 15467483 - 15467615
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| |     
T  15467483 ctaagagtgtgtttggatgaggtaattaagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattct 15467582  T
Q  296 tttgtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||| |||  ||| |||| || |||||||    
T  15467583 tttgtttgaatgaagtaataaaaaaattcattg 15467615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 50472252 - 50472136
Alignment:
Q  213 atgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgt 311  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||| ||| ||||||| ||||||||||||| ||    
T  50472252 atgagataattgagaaattttaaagaatttagaattttaggcaatttaaattattcaattaaattactttcatttttcaatacttttgtttggatggagt 50472153  T
Q  312 agtaaagaatttcattg 328  Q
    | |||| ||| ||||||    
T  50472152 aataaaaaatatcattg 50472136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 21267343 - 21267473
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||| || ||  ||||||||||||||| ||||||||| |     
T  21267343 ctaagagtgtgtttggatgagataattgagaaattttaaagaatttcgaattataggcaatttagatgattcaattaaattactttcatttctcaattct 21267442  T
Q  296 tttgtttggatggtgtagtaaagaatttcat 326  Q
    |||||||| |||  ||| |||| ||||||||    
T  21267443 tttgtttgtatgaagtaataaaaaatttcat 21267473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 41822078 - 41822202
Alignment:
Q  205 gtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttg 303  Q
    |||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||| ||  | ||||| | ||||| ||||||||||| ||||||||    
T  41822078 gtgtttggatgaagtaattgagaaattttacagaatttagaattctaggcaatttaaataattcatttaaaatgctttcatttctcaatacttttgtttg 41822177  T
Q  304 gatggtgtagtaaagaatttcattg 328  Q
    ||||| ||| |||| ||||||||||    
T  41822178 gatggagtaataaaaaatttcattg 41822202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 6470224 - 6470338
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaata 293  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||| ||||||||| || ||||||||||| |||| ||| ||||||    
T  6470224 actaagagtgtgtttggatgaggcaattgagaaatttttaaagaatttagaattctaggtaatttaaatgatttaattaaattattttcatttttcaata 6470323  T
Q  294 cctttgtttggatgg 308  Q
      |||||||||||||    
T  6470324 gttttgtttggatgg 6470338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 28632126 - 28632255
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| |||| |||||||||||||| ||  ||||||||||||||| |||||||||   |||    
T  28632126 agagtgtgtttggatgagataattgagaaattataaaaaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattttttt 28632225  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||  ||| |||| || |||||||    
T  28632226 gtttggatgaagtaataaaaaaattcattg 28632255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 32647829 - 32647724
Alignment:
Q  213 atgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgt 311  Q
    ||||||||||||||||||||||||||||||| |||| |||  ||||||||| ||  ||||||||||||||| ||||| ||||| ||||||||||||| ||    
T  32647829 atgaggtaattgagaaattttaaagaatttagaattctagaaaatttaaatgattcaattaaattactttcatttctaaatacttttgtttggatggagt 32647730  T
Q  312 agtaaa 317  Q
    | ||||    
T  32647729 aataaa 32647724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 32128639 - 32128532
Alignment:
Q  194 aaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaat 292  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||| ||||| ||| ||  ||||||||| ||||  |||||||||    
T  32128639 aaactaagagtgtgtttgaacgaggtaattgagaaattttaaagaatttaaaattttaggtaattttaatgattcaattaaattcctttaatttctcaat 32128540  T
Q  293 acctttgt 300  Q
    || |||||    
T  32128539 acttttgt 32128532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 35499601 - 35499475
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||| |||| |||  ||||||||| ||  ||||||||||| ||| |||||||||||     
T  35499601 ctaagagtgtgtttggatgaagtaatttgaaaattttaaagaatttagaattctagataatttaaatgattcaattaaattacattcatttctcaatact 35499502  T
Q  296 tttgtttggatggtgtagtaaagaatt 322  Q
    ||| ||||||||| ||| |||| ||||    
T  35499501 tttatttggatggagtaataaaaaatt 35499475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 44571738 - 44571611
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| |||  |||| ||||||||  ||  ||||||||||||||  ||||||||||  |||||    
T  44571738 agtgtgtttcgatgaggtaattgggaaattataaagaatttagaatcctaggtaatttaaacgattcaattaaattacttttatttctcaatatttttgt 44571639  T
Q  301 ttggatggtgtagtaaagaatttcattg 328  Q
    |||||||| | | |||| ||||||||||    
T  44571638 ttggatggagaaataaaaaatttcattg 44571611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 31166761 - 31166651
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaattta-taatttaggcaatttaaat-tatgtaattaaattactttcgtttctcaatacctt 297  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  ||| ||| ||||||||||  ||   |||||||||||||| ||||||||||| ||    
T  31166761 agagtgtgtttggatcaggtaattgagaaattgtaaagaatttagaaatctagtcaatttaaatggattcgattaaattactttcatttctcaatacttt 31166662  T
Q  298 tgtttggatgg 308  Q
    |||||| ||||    
T  31166661 tgtttgaatgg 31166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 47541851 - 47541911
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  47541851 agagtgtgtttggatgaggtaatttagaaattttaaagaatttaaaattctaggcaattta 47541911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 37446883 - 37447001
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||| |||| |||| |||| ||  ||||||||| ||||| || || ||||   ||    
T  37446883 agagtgtgtttggatggggtaattaagaaattttgaagaatttataattctaggtaattcaaatgattcaattaaattgctttcattcctaaatattatt 37446982  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  37446983 gtttggatggagtaataaa 37447001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 220704 - 220639
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaat 262  Q
    |||||||||||||||||||||||||||| ||||| || |||||||| |||| ||||||||||||||    
T  220704 taagagtgtgtttggatgaggtaattgaaaaattatagagaatttagaattctaggcaatttaaat 220639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 24273080 - 24273132
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  24273080 actaagagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaatt 24273132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 328
Target Start/End: Original strand, 41480952 - 41481083
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||||||||||||| | |  |||||||| ||||| || |||||||| || |||||||  |||||||||| |||| ||| ||||||| |    
T  41480952 taagagtgtgtttggatgaggtaatttaaattttttaaagcatttaaaattttaggcagttcaaattattcaattaaattaatttcatttatcaatactt 41481051  T
Q  297 ttgtttggatggtgtagtaaagaatttcattg 328  Q
    |  ||||||||  | | |||| ||||||||||    
T  41481052 tcatttggatgaagcaataaaaaatttcattg 41481083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 327
Target Start/End: Complemental strand, 48954097 - 48953967
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttata-atttaggcaatttaaattatgtaattaaattactttcgtttctcaatacc 295  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||||| |  ||||||| || ||||| ||  ||||||||||||||| ||| | ||||      
T  48954097 ctaagagtatgtttggatgagctaattgagaaattttgaagaatttagagttttaggctatctaaatgattcaattaaattactttcattttttaatatt 48953998  T
Q  296 tttgtttggatggtgtagtaaagaatttcatt 327  Q
    |||| |||||||  ||| |||| |||||||||    
T  48953997 tttg-ttggatgaagtaataaaaaatttcatt 48953967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 31196953 - 31196903
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  31196953 taagagtgtgttaggatgagataattgagaaattttaaagaatttagaatt 31196903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 37447426 - 37447508
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattacttt 281  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||| |||| |||| ||||||||| ||  ||||||||| ||||    
T  37447426 agagtgtgtttggatgaagtatttgagaaattttgaagaatttagaattctaggtaatttaaatgattcaattaaattgcttt 37447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 37036504 - 37036613
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| ||||| || || ||||   ||    
T  37036504 agagtgtgtttggatggggtaattaagaaattttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcctaaatattatt 37036603  T
Q  299 gtttggatgg 308  Q
    ||||||||||    
T  37036604 gtttggatgg 37036613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 39887615 - 39887506
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||||||||  |||||||||||||||| ||||||||| || |||||| |||| |||| ||  ||||||||| ||||| || || ||||   ||    
T  39887615 agagtgtgtttggatggagtaattgagaaattttgaagaatttagaattttaggtaattcaaatgattcaattaaattgctttcattcctaaatattatt 39887516  T
Q  299 gtttggatgg 308  Q
    ||||||||||    
T  39887515 gtttggatgg 39887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 8225324 - 8225273
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||| |||||    
T  8225324 taagagtgtgtttggatggagtaattgagaaattttgaagaatttagaattt 8225273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 4663861 - 4663811
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||| ||||    
T  4663861 taagagtttgtttggatgaggtaattgacaaattttaaggaatttaaaatt 4663811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 12293022 - 12293080
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatt 257  Q
    ||||||||||||||||||||||||| ||||| | |||||||||| |||| |||||||||    
T  12293022 agagtgtgtttggatgaggtaattgggaaatctcaaagaatttagaattctaggcaatt 12293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 37447965 - 37448019
Alignment:
Q  194 aaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||| |||||||||||||||| ||||||||||||||||| | ||||||| ||||    
T  37447965 aaacttagagtgtgtttggatggggtaattgagaaattttgatgaatttagaatt 37448019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 41577847 - 41577905
Alignment:
Q  249 taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatg 307  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||||  ||||||||||||    
T  41577847 taggcaatttaaatgattcaattaaattactttcatttctcaatatttttgtttggatg 41577905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 47165071 - 47165124
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||| ||||||||||||||||||||||   ||||||||||||||||| |||||    
T  47165071 actaacagtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattt 47165124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 13182163 - 13182107
Alignment:
Q  205 gtgtttggatgaggtaattgagaaattttaaagaattt-ataatttaggcaatttaa 260  Q
    |||||||||||||| ||||||||||||| ||||||||| | | ||||||||||||||    
T  13182163 gtgtttggatgaggcaattgagaaatttaaaagaatttgaaattttaggcaatttaa 13182107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 23955981 - 23956097
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgt 300  Q
    ||||| |||||| |||| ||||  ||||||||||| |||||| ||||| || |||||||||| ||  ||||||||||||||  ||||| ||||  |||||    
T  23955981 agtgtatttggaagaggcaattaggaaattttaaaaaatttagaattttagtcaatttaaatgattcaattaaattacttttatttcttaatatttttgt 23956080  T
Q  301 ttggatggtgtagtaaa 317  Q
    ||| |||| ||| ||||    
T  23956081 ttgaatggagtaataaa 23956097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 10167047 - 10166981
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaat 262  Q
    |||||||  ||| ||||| |||||||||| ||||||||||||||||| |||| ||||||||| ||||    
T  10167047 ctaagagaatgtctggataaggtaattgataaattttaaagaatttaaaattctaggcaattcaaat 10166981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 32288012 - 32288049
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaa 235  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  32288012 taagagtctgtttggatgtggtaattgagaaattttaa 32288049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 23969439 - 23969487
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    |||||||||||||||| ||||||||| |  |||||||||||||| ||||    
T  23969439 agagtgtgtttggatggggtaattgaaattttttaaagaatttaaaatt 23969487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 44571224 - 44571144
Alignment:
Q  203 gtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttc 282  Q
    |||||||||||||  ||| |||||||||||| ||||||||| |||| |||| |||| |||| ||  ||||||||| |||||    
T  44571224 gtgtgtttggatggagtatttgagaaattttgaagaatttaaaattctaggtaattcaaatgattcaattaaattgctttc 44571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 8475678 - 8475571
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | |||    
T  8475678 agagtgtgtttagatgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattctttt 8475579  T
Q  299 gtttggat 306  Q
    ||||||||    
T  8475578 gtttggat 8475571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 15615920 - 15616049
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataat-ttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||| |   ||||||||||||||| ||||||||||  |||    
T  15615920 agagtgtgtttggatgaggtaattgataaattttaaagaatttaaaatattaggcaattcaaatgaatcaattaaattactttcatttctcaatattttt 15616019  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||| ||| |||| |||| |||||    
T  15616020 gtttggatggagtaataaaaaattccattg 15616049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 198 - 317
Target Start/End: Complemental strand, 1369027 - 1368907
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacct 296  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||| ||| | |    
T  1369027 taagagtgtgtttggacgaggtaattgagaaattataaagaatttaaaattctaggtaatttaaatgattcaattaaattactttcatttctgaattctt 1368928  T
Q  297 ttgtttggatggtgtagtaaa 317  Q
    |||||||||||| ||| ||||    
T  1368927 ttgtttggatggagtaataaa 1368907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 328
Target Start/End: Complemental strand, 10105556 - 10105426
Alignment:
Q  199 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||  ||| ||  ||||||| |  |||| ||||||||||| ||    
T  10105556 aagagtgtgtttggatgaggtaattgagaaattttaaagaatttagacttgtaggcaattccaatgattcaattaaaatgatttcatttctcaatacttt 10105457  T
Q  298 tgtttggatggtgtagtaaagaatttcattg 328  Q
    ||||||||| | ||| || | ||||||||||    
T  10105456 tgtttggattgagtaatacaaaatttcattg 10105426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 6357825 - 6357953
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||| |||||||||| |||||||| ||||||||| || |||| | ||||||||| ||  |||||||||| |||| ||||| ||||| |||    
T  6357825 agagtgtgtttggacgaggtaattgggaaattttgaagaatttagaattttaagtaatttaaatgattcaattaaattattttcatttcttaatactttt 6357924  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||| | ||| |||| ||||||||||    
T  6357925 gtttggatagagtaataaa-aatttcattg 6357953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 34244840 - 34244903
Alignment:
Q  197 ctaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  34244840 ctaagagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggcaattta 34244903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 1195853 - 1195771
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattacttt 281  Q
    |||||||||||| |||||||||||||||||||||| |||||||  |||| |||||||||||||| ||  ||||||||| ||||    
T  1195853 agagtgtgtttgaatgaggtaattgagaaattttagagaatttgaaattctaggcaatttaaataattcaattaaattgcttt 1195771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 28918706 - 28918588
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    ||||||||||| ||  | |||||||||||||| |||| |||||| |||| || ||||||||||| ||  ||||||||||||||| ||| ||||| | |||    
T  28918706 agagtgtgtttagacaaagtaattgagaaattataaataatttaaaattctatgcaatttaaatgattcaattaaattactttcatttttcaattctttt 28918607  T
Q  299 gtttggatggtgtagtaaa 317  Q
    |||||||||| ||| ||||    
T  28918606 gtttggatggagtaataaa 28918588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 9697943 - 9697888
Alignment:
Q  194 aaactaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataattt 249  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  9697943 aaacttagagtgtgtttggatggagtaattgagaaattttaaagaatttagaattt 9697888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 724811 - 724905
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaata 293  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||| |||| |||| |||| ||  ||| ||| | ||||| ||||||||||    
T  724811 agagtgtgtttggatgaggtaattgagaattttttaagaatttagaattctaggtaattcaaatgattaaatgaaaatgctttcatttctcaata 724905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 13487487 - 13487437
Alignment:
Q  198 taagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  13487487 taagagtgtgtttggatgaggtaatttggaaattttaaagaatttaaaatt 13487437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 31413413 - 31413361
Alignment:
Q  196 actaagagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt 248  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  31413413 actaaaagtgtgtttggatggggtaattgagaaattttgaagaatttagaatt 31413361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 34364954 - 34364894
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaattta 259  Q
    ||||||||||||||||||||||||   ||||||||||||||||| |||| |||||||||||    
T  34364954 agagtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctaggcaattta 34364894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 15833154 - 15833073
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaatttaaattatgtaattaaattactttc 282  Q
    ||||||||||||||  |||||||||||||||| ||||||| | || |||||| |||| |||| || |||||||||| |||||    
T  15833154 agtgtgtttggatggagtaattgagaaattttgaagaattcagaattttaggtaattcaaatgatttaattaaattgctttc 15833073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 26855480 - 26855521
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaattta 243  Q
    |||||||||| ||||| ||||||||||||||| |||||||||    
T  26855480 agtgtgtttgaatgagataattgagaaattttgaagaattta 26855521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 29889294 - 29889355
Alignment:
Q  198 taagagtgtgtttggatgaggtaa-ttgagaaattttaaagaatttataatt-taggcaatt 257  Q
    |||||||||||||||||||||||| |||| |  |||||||||||||| |||| |||||||||    
T  29889294 taagagtgtgtttggatgaggtaatttgaaattttttaaagaatttaaaattctaggcaatt 29889355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 7688 - 7593
Alignment:
Q  213 atgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatg 307  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||| ||||||||| | ||||||||||||    
T  7688 atgaggtaattgagaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttctcaattcttttgtttggatg 7593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 19333 - 19436
Alignment:
Q  226 gaaattttaaagaatttataattt-aggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgtagtaaagaatttc 324  Q
    |||||||||||||||||| ||||| ||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||| ||| |||| ||||||    
T  19333 gaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatttctcaatacttttgtttggatggagtaataaaaaatttc 19432  T
Q  325 attg 328  Q
    ||||    
T  19433 attg 19436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 4568 - 4439
Alignment:
Q  200 agagtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaataccttt 298  Q
    |||||||||||||||||  |||||| |||||||||||||||||| |||| |||||||||||||| ||  | ||||| | ||||| ||||||||||| |||    
T  4568 agagtgtgtttggatgaactaattgggaaattttaaagaatttagaattctaggcaatttaaatgattcatttaaaatgctttcatttctcaatactttt 4469  T
Q  299 gtttggatggtgtagtaaagaatttcattg 328  Q
    |||||||||| ||| | || ||||||||||    
T  4468 gtttggatggagtaatcaaaaatttcattg 4439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 308
Target Start/End: Original strand, 11499 - 11605
Alignment:
Q  203 gtgtgtttggatgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtt 301  Q
    |||||||||||||||||| |||  ||||||||||||||||| |||| || | ||||||||| || |||||||||||||||| ||| ||||||| ||||||    
T  11499 gtgtgtttggatgaggtatttggaaaattttaaagaatttagaattctaagtaatttaaatgatttaattaaattactttcatttgtcaatacttttgtt 11598  T
Q  302 tggatgg 308  Q
    | |||||    
T  11599 tagatgg 11605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 15500 - 15604
Alignment:
Q  214 tgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgta 312  Q
    ||||||||||| |||||||||||||||||| |||| ||| | |||||||| ||  ||| ||||| ||||| |||||| |||| ||||||||| ||| |||    
T  15500 tgaggtaattgtgaaattttaaagaatttaaaattctagactatttaaatgattcaataaaattcctttcatttctcgatacttttgtttgggtggagta 15599  T
Q  313 gtaaa 317  Q
     ||||    
T  15600 ataaa 15604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 2542 - 2646
Alignment:
Q  214 tgaggtaattgagaaattttaaagaatttataatt-taggcaatttaaattatgtaattaaattactttcgtttctcaatacctttgtttggatggtgta 312  Q
    ||||||||||| |||||||||||||||||| |||| ||| | |||||||| ||  ||| ||||| ||||| |||||| |||| ||||||||| ||| |||    
T  2542 tgaggtaattgtgaaattttaaagaatttaaaattctagactatttaaatgattcaataaaattcctttcatttctcgatacttttgtttgggtggagta 2641  T
Q  313 gtaaa 317  Q
     ||||    
T  2642 ataaa 2646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 11378 - 11319
Alignment:
Q  201 gagtgtgtttggatgaggtaattgagaaattttaaagaatttataa-tttaggcaattta 259  Q
    |||||||||||||||||||||||  |||||| ||||||||||| || |||||||||||||    
T  11378 gagtgtgtttggatgaggtaatttggaaattgtaaagaatttaaaattttaggcaattta 11319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 49838 - 49886
Alignment:
Q  202 agtgtgtttggatgaggtaattgagaaattttaaagaatttataattta 250  Q
    ||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  49838 agtgtgtttggatggagtaattgagaaattttgaagaatttagaattta 49886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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