View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-31 (Length: 290)

Name: NF1441A-Insertion-31
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-31
NF1441A-Insertion-31
[»] chr8 (1 HSPs)
chr8 (8-289)||(29967434-29967719)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 29967719 - 29967434
Alignment:
Q  8 tatttgactcactccctcctgaaatactcctcaaaatcacaagactattaagccctaaacatgctgccaaactctgcctcgtttgcaagtcatggcgatc 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29967719 tatttgactcactccctcctgacatactcctcaaaatcacaagactattaggccctaaacatgctgccaaactctgcctcgtttgcaagtcatggcgatc 29967620  T
Q  108 tctcgtctccgataacgaactctgggcycatattcttcagactcaccatcctatagactttcactcaattatcttctcaaaaactaatttaacctctggt 207  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||| ||| |||||||| ||||||||||||||||||||    
T  29967619 tctcgtctccgataacgaactctgggctcattttcttcagactcaccagcctatacactttcactctattctcttctcagaaactaatttaacctctggt 29967520  T
Q  208 taccctcttccgtaagt----tatcataaagtaacggtaactaacttgtgttgtttrattggaactaataatttcatttcatttca 289  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29967519 taccctcttccgtaagttatatatcataaagtaacggtaactaacttgtgttgtttaattggaactaataatttcatttcatttca 29967434  T

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