View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441A-Insertion-32 (Length: 803)
Name: NF1441A-Insertion-32
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-32 |
 | |
|
| [»] scaffold1667 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 696
Target Start/End: Complemental strand, 32223236 - 32222546
Alignment:
| Q |
8 |
cctacaacttcggttgattgttcaatcacactagcctatgccattagttcggttccagaccccgtctcggtagtccctgcctttgttgcagactcgattc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32223236 |
cctacaacttcggttgattgttcaatcacactagcctataccattagttcggttccagaccccgtctcggtagtccctgcctttgttgcagactcggttc |
32223137 |
T |
|
| Q |
108 |
tcgtagacagcagcataggcacgtaaatcctgcttacagatgatgcagttccagtagctgcggccattgtgtcttgctcggctcccattgaaagttcatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32223136 |
tcgtagacagcagcataggcacgtaaatcctgcttacagatgatgcagttccagtagctgcggccattgtgtcttgctcggctcccattgaaagttcatt |
32223037 |
T |
|
| Q |
208 |
ggtctcgcaagaagttggtattgtgcagcacagtaatccaaggatttaacatgatatgtagctttggtagcggatcaaagactatgacaagagggccgat |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32223036 |
ggtctcgcaagaagttggtattgttcagcacagtaatccaaggattcaacatgatatggagctttggtagcggatcaaagactatgacaagagggccgct |
32222937 |
T |
|
| Q |
308 |
gaagctcctttcactcatgtcttgtcaaaaaagcaaaattagaatttatagaaacaacaacttactaggaagccgccgtatagaacccgttcgacgggaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32222936 |
gaagctcctttcactcatgtcttgtcaaaaaagcaaaattagaatttatagaaacaacaacttactaggaagccgccgtatagaacccgttcgacgggaa |
32222837 |
T |
|
| Q |
408 |
tcatatgcctaatgaattttttctattggaatattagaggggccttggttgttcatgggggacttttatcgtgaaggtaactgttgcgttaaaaagttgg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32222836 |
ccatatgcctaatgaattttttctattggaatattagaggggccttggttgttcatgggggacttttatcgcgaaggtaactgttgcgttaaaaagttgg |
32222737 |
T |
|
| Q |
508 |
ctaatatgggacatgcactacaa-gttcagtttggttgacggctttacctcgagaatttaactttgatttattttgggacagatgcggtctgcctaatta |
606 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32222736 |
ctaatatgggacatgcactacaaggttcagtttggttgacggc--tacctcgagaatttaaatttgattgattttgggacagatgcggtctgcctaatta |
32222639 |
T |
|
| Q |
607 |
cagattcccctagtctgtaggttt--ctttccttttgctttcttgttttga-agttttggtctagtcccatcgtcttt-tatatatttttcccc |
696 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
32222638 |
cagattcccctagtctgttggttttcttttcctttttctttcttgttttgagagttttggtctagtccc-ccgtctttgtatatatttttcccc |
32222546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 32238395 - 32238113
Alignment:
| Q |
10 |
tacaacttcggttgattgttcaatcacactagcctatgccattagttcggttccagaccccgtctcggtagtccctgcctttgttgcagactcgattctc |
109 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
32238395 |
tacaactttggttgatggttcaatcacaccagcctatgccattaattcggtttcagaccccgtcccagtagtccctgcctttgttgcagactcggttctc |
32238296 |
T |
|
| Q |
110 |
gtagacagcagcataggcacgtaaatcctgcttacagatgatgcagttccagtagctgcggccattgtgtcttgctcggctcccattgaaagttcattgg |
209 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| || ||||||||| ||||| || |||| ||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
32238295 |
gtagacagcaacataggcacgcaaatcctgctgactgatgatgcatttccaacagttgcgaccattgtgtctagctcgtctcccatttcaagttcattgg |
32238196 |
T |
|
| Q |
210 |
tctcgcaagaagttggtattgtgcagcacagtaatccaaggatttaacatgatatgtagctttggtagcggatcaaagactat |
292 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
32238195 |
tctcgcatgaagttggtattgtgcaacacagtaatccaaggattcaacatgatatggagctttcgcagcggatcaaagactat |
32238113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 655
Target Start/End: Original strand, 22704605 - 22705253
Alignment:
| Q |
8 |
cctacaacttcggttgattgttcaatcacactagcctatgccattagttcggttccagaccccgtctcggtagtccctgcctttgttgcagactcgattc |
107 |
Q |
| |
|
|||||||| || ||||| ||||| |||||| |||||||||||||| |||||||| |||||| ||| | ||||||||||||||||||||||| | ||| |
|
|
| T |
22704605 |
cctacaacaccgattgatggttcagtcacaccagcctatgccattaattcggttctagaccc-gtcgcaacagtccctgcctttgttgcagactgggttc |
22704703 |
T |
|
| Q |
108 |
tcgtagacagcagcataggcacgtaaatcctgcttacagatgatgcagttccagtagctgcggccattgtgtcttgctcggctcccattgaaagttcatt |
207 |
Q |
| |
|
|| | |||||| |||| |||| |||||||||| |||||||||||||||||| |||||||||||| ||||| | ||||||||||| ||| ||||||||| |
|
|
| T |
22704704 |
tcatgaacagcaacatatgcacacaaatcctgctgacagatgatgcagttccattagctgcggccagtgtgtttagctcggctcccgttgcaagttcatt |
22704803 |
T |
|
| Q |
208 |
ggtctcgcaagaagttggtattgtgcagcacagtaatccaaggatttaacatgatatgtagctttggtagcggatcaaagactatgacaagagggccgat |
307 |
Q |
| |
|
| | |||| ||||||||| |||||||||| ||||||||||||||| |||||| |||| ||||||| || | |||||||||||| |||||||||| | | |
|
|
| T |
22704804 |
agccacgcatgaagttggtcttgtgcagcatagtaatccaaggattcaacatgctatggagctttgacagtgaatcaaagactataacaagagggcagct |
22704903 |
T |
|
| Q |
308 |
gaagctcctttcactcatgtcttgtcaaaaaagcaaaattagaatttatagaaacaacaacttactaggaagccgccgtatagaacccgttcgacggga- |
406 |
Q |
| |
|
||| ||||||||| || ||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||| |||| |||||| |
|
|
| T |
22704904 |
gaacctcctttcattcctgtcttgtctaaaaagcaaaaccagaatttaaagaaacaacaacttactgggaagccgccacatagaacttgttccacgggag |
22705003 |
T |
|
| Q |
407 |
-------atcatatgcctaatgaattttttctattggaatattagaggggccttggttgttcatgggggacttttatcgtgaaggtaactgttgcgttaa |
499 |
Q |
| |
|
||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| | ||| | |
|
|
| T |
22705004 |
agccctcgccatctgcccaatgaattttttctattgaaatcttagaggggccttggttgttcatgggggactttaatcgtgaaggca--------gttga |
22705095 |
T |
|
| Q |
500 |
aaagttggctaatatgggacatgcactaca-agttcagtttggttgacggctttacctcgagaatttaactttgatttattttgggacagatgcggtctg |
598 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||| |||| |||||| |||| ||| |||||| ||||||||||| ||| | ||| || ||||||| |
|
|
| T |
22705096 |
taagttggctaatat-agatatgcactacagggttcaatttgattgacgactttttctccagaattgaactttgatttctttcagaacaaatacggtctg |
22705194 |
T |
|
| Q |
599 |
cctaattacagattcccctagtctgtaggtttc--tttccttttgctttcttgttttga |
655 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||| |
|
|
| T |
22705195 |
cctaattacagattcccctagtctattggtttccgtttcctttttctttcttgttttga |
22705253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 20737144 - 20736883
Alignment:
| Q |
27 |
gttcaatcacactagcctatgccattagttcggttccagaccccgtctcggtagtccctgcctttgttgcagactcgattctcgtagacagcagcatagg |
126 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| |||||||||||| || | | | || | ||||||||||||||| | | ||| |||| || | |||| |
|
|
| T |
20737144 |
gttcagtcacacaagcctatgccattaattcagttccagaccccttcccagccgcccgt--ctttgttgcagactcagtacacgtggacaacaacttagg |
20737047 |
T |
|
| Q |
127 |
cacgtaaatcctgcttacagatgatgcagttccagtagctgcggccattgtgtcttgctcggctcccattgaaagttcattggtctcgcaagaagttggt |
226 |
Q |
| |
|
||| |||| ||||| ||| ||||| |||||| |||| || ||||||||||| |||||| ||||||||| | |||||| | | | || ||||||||| |
|
|
| T |
20737046 |
cacacaaattctgctgacacctgatgtgattccagcagctacgaccattgtgtctagctcggatcccattgacaattcattagccacacatgaagttggt |
20736947 |
T |
|
| Q |
227 |
attgtgcagcacagtaatccaaggatttaacatgatatgtagctttggtagcggatcaaagact |
290 |
Q |
| |
|
|||| | | |||||||||||||||||| ||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
20736946 |
attgcgtatcacagtaatccaaggattcaacatgatatggagctttggcagcgaatcaaagact |
20736883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 306 - 655
Target Start/End: Complemental strand, 33956822 - 33956477
Alignment:
| Q |
306 |
atgaagctcctttcactcatgtcttgtcaaaaaagcaaaattagaatttatagaaacaacaacttactaggaagccgccgtatagaacccgttcgacggg |
405 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| |||| | |||||| ||||||||||| ||| ||| |||||||||||||||||| ||| ||| | |
|
|
| T |
33956822 |
atgaagctcccgtcactctcctcttgtcaaaaaagaaaaaagaaaatttaaagaaacaacaattta-tagaaagccgccgtatagaacctgttttacgcg |
33956724 |
T |
|
| Q |
406 |
aat--------catatgcctaatgaatttttt-ctattggaatattagaggggccttggttgttcatgggggacttttatcgtgaaggtaactgttgcgt |
496 |
Q |
| |
|
| ||| |||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33956723 |
agagccctcgccatctgcccaatgaatttttttctattggaatataagagaggccttggttgttcatgggggacttttatcgggaag------------- |
33956637 |
T |
|
| Q |
497 |
taaaaagttggctaatatgggacatgcactacaag-ttcagtttggttgacggctttacctcgagaatttaactttgatttattttgggacagatgcggt |
595 |
Q |
| |
|
| |||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||| ||| |
|
|
| T |
33956636 |
--acaagttgactaatatgggatatgcactacatggttcagtttggttgacggctttaccttcagaattgaactttgatttctttcacgacagatgtggt |
33956539 |
T |
|
| Q |
596 |
ctgcctaattacagattcccctagtctgtaggttt--ctttccttttgctttcttgttttga |
655 |
Q |
| |
|
||| ||||||||||||||||||||| ||| | ||| ||||||||| |||||||||||||| |
|
|
| T |
33956538 |
ctgtctaattacagattcccctagtttgttgattttcttttcctttttctttcttgttttga |
33956477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 33956947 - 33956815
Alignment:
| Q |
138 |
tgcttacagatgatgcagttccagtagctgcggccattgtgtcttgctcggctcccattgaaagttcattggtctcgcaagaagttggtattgtgcagca |
237 |
Q |
| |
|
|||| |||||||||| ||| |||| || || ||||||||||||| ||| ||||| | || ||||||||| | | |||| |||||||||||||||||||| |
|
|
| T |
33956947 |
tgctgacagatgatgtagtaccagcagttgtggccattgtgtctagcttggctctgactgcaagttcattagccacgcatgaagttggtattgtgcagca |
33956848 |
T |
|
| Q |
238 |
cagtaatccaaggatttaacatgatatgtagct |
270 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| |
|
|
| T |
33956847 |
caataatccaaggattcaacatgatatgaagct |
33956815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 33957054 - 33956974
Alignment:
| Q |
49 |
cattagttcggttccagaccccgtctcggtagtccctgcctttgttgcagactcgattctcgtagacagcagcataggcac |
129 |
Q |
| |
|
||||| |||||||||||||||| || | ||| ||||||||||||||||||||| | ||| ||| ||||||| ||||||||| |
|
|
| T |
33957054 |
cattacttcggttccagaccccatcccagtaatccctgcctttgttgcagacttggttcccgtggacagcaacataggcac |
33956974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 167 - 323
Target Start/End: Complemental strand, 2040631 - 2040473
Alignment:
| Q |
167 |
gcggccattgtgtcttgctcggctcccattgaaagttcattggtctcgcaagaagttggtattgtgc--agcacagtaatccaaggatttaacatgatat |
264 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||| | | | || ||||||||||||||| | || ||||||||||||||| |||||||||| |
|
|
| T |
2040631 |
gcggccattatgtctagctcggctcccattgcaagttcattagccacacatgaagttggtattgtgtgtatcatagtaatccaaggattcaacatgatat |
2040532 |
T |
|
| Q |
265 |
gtagctttggtagcggatcaaagactatgacaagagggccgatgaagctcctttcactc |
323 |
Q |
| |
|
| |||||||| ||||||||||||| ||| |||||||| | ||||||||||||||||| |
|
|
| T |
2040531 |
ggagctttggcagcggatcaaagattattacaagaggaaagttgaagctcctttcactc |
2040473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 503 - 611
Target Start/End: Complemental strand, 2040346 - 2040237
Alignment:
| Q |
503 |
gttggctaatatgggacatgcactacaag-ttcagtttggttgacggctttacctcgagaatttaactttgatttattttgggacagatgcggtctgcct |
601 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||||||||||||| |||||| || |||||| ||||||||||| ||| |||| ||||||||| ||||| |
|
|
| T |
2040346 |
gttggctaatatggggcatgcagtacaaggtttagtttggttgacgactttacttccagaattgaactttgatttctttcgggatagatgcggtttgcct |
2040247 |
T |
|
| Q |
602 |
aattacagat |
611 |
Q |
| |
|
|||||||||| |
|
|
| T |
2040246 |
aattacagat |
2040237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 535 - 655
Target Start/End: Complemental strand, 18142955 - 18142833
Alignment:
| Q |
535 |
agtttggttgacggctttacctcgagaatttaactttgatttattttgggacagatgcggtctgcctaattacagattcccctagtctgtaggttt--ct |
632 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||||||| ||| || ||| |||||||||||||| ||||| ||||||||||| ||| ||||| | |
|
|
| T |
18142955 |
agtttggttgacgactttacctccagaattgaactttgatttctttcggaacatatgcggtctgcctacttacatattcccctagtatgttggttttctt |
18142856 |
T |
|
| Q |
633 |
ttccttttgctttcttgttttga |
655 |
Q |
| |
|
|||| ||| |||||||||||||| |
|
|
| T |
18142855 |
ttccgttttctttcttgttttga |
18142833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1667 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1667
Description:
Target: scaffold1667; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 696
Target Start/End: Complemental strand, 894 - 802
Alignment:
| Q |
604 |
ttacagattcccctagtctgtag-gtttctttccttttgctttcttgttttga-agttttggtctagtcccatcgtcttttatatatttttcccc |
696 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| |||| ||||||||| ||||||||||||| || || |||| ||||||||||||||| |
|
|
| T |
894 |
ttacagattcccttagtctgttgattttctttcctttt-ctttattgttttgagggttttggtctagttccctc-tcttgtatatatttttcccc |
802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 696
Target Start/End: Original strand, 20745 - 20837
Alignment:
| Q |
604 |
ttacagattcccctagtctgtag-gtttctttccttttgctttcttgttttga-agttttggtctagtcccatcgtcttttatatatttttcccc |
696 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| |||| ||||||||| ||||||||||||| || || |||| ||||||||||||||| |
|
|
| T |
20745 |
ttacagattcccttagtctgttgattttctttcctttt-ctttattgttttgagggttttggtctagttccctc-tcttgtatatatttttcccc |
20837 |
T |
|
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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 624
Target Start/End: Original strand, 7841112 - 7841154
Alignment:
| Q |
582 |
gggacagatgcggtctgcctaattacagattcccctagtctgt |
624 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
7841112 |
gggacagatgcggtttgcctaattacagatttccttagtctgt |
7841154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 612
Target Start/End: Complemental strand, 18332918 - 18332888
Alignment:
| Q |
582 |
gggacagatgcggtctgcctaattacagatt |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18332918 |
gggacagatgcggtctgcctaattacagatt |
18332888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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