View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-36 (Length: 112)

Name: NF1441A-Insertion-36
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-36
NF1441A-Insertion-36
[»] chr1 (2 HSPs)
chr1 (8-112)||(29285205-29285309)
chr1 (8-111)||(35233111-35233214)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-50
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 29285309 - 29285205
Alignment:
Q  8 aaaacggaaacaccaaaaaacttatgaatagtgctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacta 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29285309 aaaacggaaacaccaaaaaacttatgaatagtgctgcattatataagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacta 29285210  T
Q  108 aaaac 112  Q
    |||||    
T  29285209 aaaac 29285205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 35233214 - 35233111
Alignment:
Q  8 aaaacggaaacaccaaaaaacttatgaatagtgctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacta 107  Q
    ||||||||| |||||| ||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35233214 aaaacggaagcaccaacaaatttatgaaacgcgctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacaa 35233115  T
Q  108 aaaa 111  Q
    ||||    
T  35233114 aaaa 35233111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University