View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-4 (Length: 217)
Name: NF1441A-Insertion-4
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-4 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 6031513 - 6031415
Alignment:
| Q |
119 |
tgtgttatatctcacaagccttgtcgtactgcacgattaagtcggccaaacttataatattgttaaacaatgaatccttattgaatatagaactcttgc |
217 |
Q |
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| T |
6031513 |
tgtgttatatctcacaagccttgtcgtactgcacgattaagtcggtcaaatttataatattgttaaacaatgaatccttattgaatatagaactcttgc |
6031415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 6031336 - 6031388
Alignment:
| Q |
70 |
catgcaattcaaattgcacgtggacttgaagcatttgattgaattaaaatgtg |
122 |
Q |
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| T |
6031336 |
catgcaattcaactggcatgtggatgtgaaacatttgattgaattaaaatgtg |
6031388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 6033180 - 6033152
Alignment:
| Q |
91 |
ggacttgaagcatttgattgaattaaaat |
119 |
Q |
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| T |
6033180 |
ggacttgaagcatttgattgaattaaaat |
6033152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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