View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-5 (Length: 481)
Name: NF1441A-Insertion-5
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 231 - 481
Target Start/End: Complemental strand, 44535336 - 44535086
Alignment:
| Q |
231 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
330 |
Q |
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| T |
44535336 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
44535237 |
T |
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| Q |
331 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaag |
430 |
Q |
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| T |
44535236 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaag |
44535137 |
T |
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| Q |
431 |
ttgatgagtttctcatcttctccctcatgttggtagtaaccttttcctcta |
481 |
Q |
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| T |
44535136 |
ttgatgagtttctcatcttctccctcatgttggtagtaaccttttcctcta |
44535086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 44535612 - 44535488
Alignment:
| Q |
12 |
taatgcaaaatatagggacagtataattggttgcgcaccttatttctgatcttatacatctaaaccacgtatgcttcttcaaaaattattaaagagagta |
111 |
Q |
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| T |
44535612 |
taatgcaaaatatagggacagtataattggttgcgcaccttatttctgatcttatacatctaaaccatgtatgcttcttcaaaaattattaaagagagta |
44535513 |
T |
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| Q |
112 |
aaagctaggaaacaacaaatcaagc |
136 |
Q |
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| T |
44535512 |
aaagctaggaaacaacaaatcaagc |
44535488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 44535443 - 44535405
Alignment:
| Q |
151 |
gatgatgatatagtgcatacaccaaacttaaacattaat |
189 |
Q |
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| T |
44535443 |
gatgatgatataatgcatacaccaaacttaaacattaat |
44535405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 2579856 - 2579963
Alignment:
| Q |
241 |
ccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcactggcattga |
340 |
Q |
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| T |
2579856 |
cccctagcaagcattttctcataattctcaatagattgaagcctctgaagcataagctgctgcctaaagttcttaatgaaggcatcagcactagcattga |
2579955 |
T |
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| Q |
341 |
tgtcttct |
348 |
Q |
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| T |
2579956 |
tatcttct |
2579963 |
T |
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