View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-6 (Length: 262)
Name: NF1441A-Insertion-6
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 10338224 - 10337970
Alignment:
| Q |
8 |
ggttgtaacaacagttctaccaccactagcaagttttttgatagtgtttaagattctcaaagcagtggtagaatccaaaccagaagtaggttcatcaagc |
107 |
Q |
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| T |
10338224 |
ggttgtaacaacagttctaccaccactagcaagttttttgatagtgtttaagattctcaaagcagtggtagaatccaaaccagaagtaggttcatcaagc |
10338125 |
T |
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| Q |
108 |
aacaaaaggcttggatttataagcatttcttgtcctatactcactctccttttctcaccacctgatatacctctcaaaagtggtcctccaatcatactat |
207 |
Q |
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| T |
10338124 |
aacaaaaggcttggatttataagcatttcttgtcctatactcactctccttttctcaccacctgatatacctctcaaaagtggtcctccaatcatactat |
10338025 |
T |
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| Q |
208 |
tcctacaattatttagtcctaactcagaaatcactctctctacatgcacaacttt |
262 |
Q |
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| T |
10338024 |
tcctacaattatttagtcctaactcagaaatcactctctctacatgcacaacttt |
10337970 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 33718674 - 33718601
Alignment:
| Q |
75 |
gtagaatccaaaccagaagtaggttcatcaagcaacaaaaggcttggatttataagcatttcttgtcctatact |
148 |
Q |
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| T |
33718674 |
gtagaatccaaaccagaagttggttcatcaagaaacaacaaactaggatttataagcaattcttgtccaatact |
33718601 |
T |
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