View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-7 (Length: 423)
Name: NF1441A-Insertion-7
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 43624699 - 43624961
Alignment:
| Q |
25 |
gtgtttgtatttatagtttcttatgttaattgaaattaaatttat---ctttcatatgatgaatgtgacgcctgctaacagatttacaaccaaaatgacg |
121 |
Q |
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| T |
43624699 |
gtgtttgtatttatagtttcttatgttaattgaaattaaatttatattctttcatatgatgaatgtgacgcctgctaacagatttacaaccaaaatgacg |
43624798 |
T |
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| Q |
122 |
agttctatttccaaagacttgtaatatgtaataatgagattcaaaaaattcaaagagcttttgtattgatgtgtgtgaaatgaagaatttcatgctatga |
221 |
Q |
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| T |
43624799 |
aggacta-ttccaaagacttgtaatatgtaataatgagattcaaaaaat-------gcttttgtattgatgtgtgtgaaatgaagaatttcatgctatga |
43624890 |
T |
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| Q |
222 |
aaagggaaacaattatacaacctaaagaaattggagcttgtagttccatgtgtccacctcccaacaaagtt |
292 |
Q |
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| T |
43624891 |
aaagggaaacaattatacaacctaaagaaattggagcttgtagttccatgtgtccacctcccaacaaagtt |
43624961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 43994316 - 43994176
Alignment:
| Q |
8 |
tgtggcagcactattatgtgtttgtatttatagtttcttatgttaattgaaattaaattta---tctttcatatgatgaatgtgacgcctgctaacagat |
104 |
Q |
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| T |
43994316 |
tgtggcagcactattatgtgtttgtatttatagtttcttatgttaattgaaattaaatttatattctttcatatgatgaatgtgacgcctgctaactgat |
43994217 |
T |
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| Q |
105 |
ttacaaccaaaatgacgagttctatttccaaagacttgtaat |
146 |
Q |
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| T |
43994216 |
gtacaaccaaaatgacgagtacta-ttccaaagacttgtaat |
43994176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 26413076 - 26413187
Alignment:
| Q |
151 |
aataatgagattcaaaaaattcaaagagcttttgtatt----gatgtgtgtgaaatgaagaa-tttcatgctatgaaaagggaaacaattatacaaccta |
245 |
Q |
| |
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|||||||||||||||| ||| || ||||||||||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26413076 |
aataatgagattcaaacaatacatagagcttttgtatgaggagatgtggatgaaaagaagaagtttcatgctatgaaaagggaaacaattatacaaccta |
26413175 |
T |
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| Q |
246 |
aagaaattggag |
257 |
Q |
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|||||||||||| |
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| T |
26413176 |
aagaaattggag |
26413187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 30216342 - 30216295
Alignment:
| Q |
8 |
tgtggcagcactattatgtgtttgtatttatagtttcttatgttaatt |
55 |
Q |
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| T |
30216342 |
tgtggcagcactattatgtgtttgtatttatagtttcttatgttaatt |
30216295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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