View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-9 (Length: 835)

Name: NF1441A-Insertion-9
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-9
NF1441A-Insertion-9
[»] chr5 (30 HSPs)
chr5 (383-835)||(1163360-1163813)
chr5 (6-325)||(1162984-1163302)
chr5 (460-835)||(1849923-1850287)
chr5 (383-699)||(3299652-3299965)
chr5 (383-699)||(3392545-3392858)
chr5 (55-300)||(40418824-40419069)
chr5 (712-835)||(3299491-3299617)
chr5 (712-835)||(3392384-3392510)
chr5 (712-833)||(40418243-40418364)
chr5 (712-835)||(39879772-39879895)
chr5 (712-835)||(38987663-38987786)
chr5 (712-835)||(39726376-39726499)
chr5 (183-311)||(3300024-3300147)
chr5 (183-311)||(3392917-3393040)
chr5 (542-699)||(40418417-40418571)
chr5 (715-834)||(39399818-39399937)
chr5 (572-662)||(38987873-38987963)
chr5 (572-662)||(39726592-39726682)
chr5 (572-662)||(39879988-39880078)
chr5 (257-311)||(1850390-1850444)
chr5 (219-300)||(38988246-38988336)
chr5 (183-300)||(39880369-39880495)
chr5 (715-831)||(39168808-39168924)
chr5 (587-644)||(39169041-39169098)
chr5 (392-487)||(38988048-38988140)
chr5 (398-487)||(40418626-40418712)
chr5 (392-487)||(39726767-39726863)
chr5 (596-638)||(39400042-39400084)
chr5 (415-487)||(39880163-39880232)
chr5 (87-124)||(39400512-39400549)
[»] chr4 (7 HSPs)
chr4 (7-300)||(25911510-25911821)
chr4 (712-816)||(25912295-25912399)
chr4 (579-699)||(25912122-25912239)
chr4 (715-780)||(44444772-44444837)
chr4 (392-462)||(44444435-44444505)
chr4 (392-487)||(25911942-25912034)
chr4 (198-263)||(44444207-44444272)


Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 383 - 835
Target Start/End: Original strand, 1163360 - 1163813
Alignment:
Q  383 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163360 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 1163459  T
Q  483 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 582  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163460 aatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 1163559  T
Q  583 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163560 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 1163659  T
Q  683 cttggtaatcaaaatgggatctccttca-gcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtg 781  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163660 cttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtg 1163759  T
Q  782 tgattattatttccaatatctttgacacgagcaactatggcattagctaaacga 835  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163760 tgattattatttccaatatctttgacacgagcaactatggcattagctaaacga 1163813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 1162984 - 1163302
Alignment:
Q  6 catccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaaga 105  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162984 catccagcacatgaacgaatcc-atataaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaaga 1163082  T
Q  106 tcaaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaacacatgcatggaagacaggaaagtaaatggtgaaaggaactttatat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163083 tcaaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaacacatgcatggaagacaggaaagtaaatggtgaaaggaactttatat 1163182  T
Q  206 gccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163183 gccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaa 1163282  T
Q  306 gtaagttgttcttgttatcg 325  Q
    ||||||||||||||||||||    
T  1163283 gtaagttgttcttgttatcg 1163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 460 - 835
Target Start/End: Complemental strand, 1850287 - 1849923
Alignment:
Q  460 atcatccatcaagcaaatcctccaatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagat 559  Q
    ||||||||||||||||||||||||||||       |||||   ||| |||||||||| | ||||||||||||||||||||| ||||||||||||||        
T  1850287 atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcggt---- 1850192  T
Q  560 tgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctacca 659  Q
               ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  1850191 -----------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctacca 1850103  T
Q  660 ttctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttca-gcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaa 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||    
T  1850102 ttctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaa 1850003  T
Q  759 gatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacga 835  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1850002 gatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaactatggcattagctaaacga 1849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 383 - 699
Target Start/End: Complemental strand, 3299965 - 3299652
Alignment:
Q  383 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 482  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  3299965 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 3299869  T
Q  483 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 582  Q
    |||||       |||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  3299868 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 3299769  T
Q  583 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 682  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  3299768 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaat 3299669  T
Q  683 cttggtaatcaaaatgg 699  Q
     ||||| ||||||||||    
T  3299668 tttggtgatcaaaatgg 3299652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 383 - 699
Target Start/End: Complemental strand, 3392858 - 3392545
Alignment:
Q  383 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 482  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  3392858 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 3392762  T
Q  483 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 582  Q
    |||||       |||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  3392761 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 3392662  T
Q  583 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 682  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  3392661 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaat 3392562  T
Q  683 cttggtaatcaaaatgg 699  Q
     ||||| ||||||||||    
T  3392561 tttggtgatcaaaatgg 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 55 - 300
Target Start/End: Complemental strand, 40419069 - 40418824
Alignment:
Q  55 acaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgcttacctgcatctgtaagattcctagt 154  Q
    ||||| ||||||| || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||  || ||||||||| || |||||    
T  40419069 acaaataactgttaaagatttatgaaacagatatttacgtagcagagaagatcgaaccaatgcatattagctgcttaattgtatctgtaagctttctagt 40418970  T
Q  155 gtaacacatgcatggaagacaggaaagtaaatggtgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacata 254  Q
    ||| ||||||    ||||||| ||||     |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  40418969 gtaccacatg----gaagacatgaaa-----tggtgaaaggaactttttatgccgaatataatgacaggcatggtttgtgaagcacgatcaacacacgta 40418879  T
Q  255 acttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 300  Q
    |||||||||         |||||||||||||||||||||||||||||||| ||||    
T  40418878 acttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 40418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 3299617 - 3299491
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3299617 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3299518  T
Q  809 cgagcaactatggcattagctaaacga 835  Q
    |||||||| ||||||| ||||||||||    
T  3299517 cgagcaaccatggcatcagctaaacga 3299491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 3392510 - 3392384
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3392510 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3392411  T
Q  809 cgagcaactatggcattagctaaacga 835  Q
    |||||||| ||||||| ||||||||||    
T  3392410 cgagcaaccatggcatcagctaaacga 3392384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 712 - 833
Target Start/End: Complemental strand, 40418364 - 40418243
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 810  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  40418364 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 40418266  T
Q  811 agcaactatggcattagctaaac 833  Q
    |||||| |  |||| ||||||||    
T  40418265 agcaaccacagcatcagctaaac 40418243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 39879895 - 39879772
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 810  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||| |||||    
T  39879895 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacg 39879797  T
Q  811 agcaactatggcattagctaaacga 835  Q
    |||||| |  |||| ||||||||||    
T  39879796 agcaaccacagcatcagctaaacga 39879772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 38987786 - 38987663
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 810  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| |||||    
T  38987786 caggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacg 38987688  T
Q  811 agcaactatggcattagctaaacga 835  Q
    |||||| |  |||| ||||||||||    
T  38987687 agcaaccacagcatcagctaaacga 38987663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 39726499 - 39726376
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 810  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| |||||    
T  39726499 caggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacg 39726401  T
Q  811 agcaactatggcattagctaaacga 835  Q
    |||||| |  |||| ||||||||||    
T  39726400 agcaaccacagcatcagctaaacga 39726376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 3300147 - 3300024
Alignment:
Q  183 aaatggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatat 278  Q
    ||||||||||||| |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||    
T  3300147 aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatat 3300057  T
Q  279 caaacagaaattgcaaattgcaacaaagtaagt 311  Q
    ||||||||||||||||||||||||| |||||||    
T  3300056 caaacagaaattgcaaattgcaacagagtaagt 3300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 3393040 - 3392917
Alignment:
Q  183 aaatggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatat 278  Q
    ||||||||||||| |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||    
T  3393040 aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatat 3392950  T
Q  279 caaacagaaattgcaaattgcaacaaagtaagt 311  Q
    ||||||||||||||||||||||||| |||||||    
T  3392949 caaacagaaattgcaaattgcaacagagtaagt 3392917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 542 - 699
Target Start/End: Complemental strand, 40418571 - 40418417
Alignment:
Q  542 ggttggatttcggtagattgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctga 641  Q
    |||| ||| |||||||  |||||||  || |||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| |||    
T  40418571 ggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatga 40418472  T
Q  642 acaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 699  Q
    | || |||||||||||||||   |||||  ||| ||||||||||||| ||||||||||    
T  40418471 agagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatgg 40418417  T

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Target: chr5; HSP #16
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 715 - 834
Target Start/End: Complemental strand, 39399937 - 39399818
Alignment:
Q  715 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 813  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| || ||  ||||||||    
T  39399937 gtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaaaattttccacacgagc 39399839  T
Q  814 aactatggcattagctaaacg 834  Q
    ||| | ||||| |||||||||    
T  39399838 aaccacggcatcagctaaacg 39399818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 38987963 - 38987873
Alignment:
Q  572 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 662  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  38987963 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 38987873  T

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Target: chr5; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 39726682 - 39726592
Alignment:
Q  572 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 662  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  39726682 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 39880078 - 39879988
Alignment:
Q  572 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 662  Q
    ||||| |||||||| || |||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  39880078 gaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 1850444 - 1850390
Alignment:
Q  257 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 311  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagt 1850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 38988336 - 38988246
Alignment:
Q  219 acaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  38988336 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 38988246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 39880495 - 39880369
Alignment:
Q  183 aaatggtgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacata 273  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||| ||||||||||| |||||||||||  ||| | ||||         ||||||||||    
T  39880495 aaatggtgaaagtaactttttatgccgaatatattgacagacatgttttgggaagcaagatcaacacacggaacatattcttgtgatcggaataaacata 39880396  T
Q  274 aatatcaaacagaaattgcaaattgca 300  Q
    |||||||||||||||||||||| ||||    
T  39880395 aatatcaaacagaaattgcaaactgca 39880369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 715 - 831
Target Start/End: Complemental strand, 39168924 - 39168808
Alignment:
Q  715 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 813  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  39168924 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 39168826  T
Q  814 aactatggcattagctaa 831  Q
    ||| | ||||| ||||||    
T  39168825 aaccacggcatcagctaa 39168808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 587 - 644
Target Start/End: Complemental strand, 39169098 - 39169041
Alignment:
Q  587 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaaca 644  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  39169098 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaaca 39169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 38988140 - 38988048
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    ||||| ||||||||||||  ||||||||||||| | ||||||| |||||||||||| || | |||   ||||||| |||||||| |||||||||||    
T  38988140 ttgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactag---atcatccgtcaagcaagtcctccaatgg 38988048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 487
Target Start/End: Complemental strand, 40418712 - 40418626
Alignment:
Q  398 ttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    ||||||||||||  |||||||||| || | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  40418712 ttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 40418626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 39726863 - 39726767
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagat-catcatccatcaagcaaatcctccaatgg 487  Q
    ||||| || |||||||||  ||||||||||||| | | ||||| |||||||||||| |||| ||| |  ||||||| |||||||| |||||||||||    
T  39726863 ttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatgg 39726767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 596 - 638
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  596 tagatcttttaagaagagttgataaccagattcccacttatcc 638  Q
    |||||||| |||||||||||||||| |||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 487
Target Start/End: Complemental strand, 39880232 - 39880163
Alignment:
Q  415 aaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    |||||||||| | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  39880232 aaaacatcaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 39880163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 39400549 - 39400512
Alignment:
Q  87 atttacatagcagagaagatcaaaccaatgcatattag 124  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  39400549 atttacatagcatagaaaatcaaaccaatgcatattag 39400512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 25911510 - 25911821
Alignment:
Q  7 atccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagat 106  Q
    |||||||||| |||||||||| || ||||||||| ||| |||| ||||    ||||||||| || ||||| |||||||||||||||||||||||||||||    
T  25911510 atccagcacaggaatgaatcc-atataaaaggtaatacgatactacaa----acaactgttaaagatttatgaaacagatatttacatagcagagaagat 25911604  T
Q  107 caaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaacacatgcatggaagacaggaaagtaaatg------------------g 188  Q
    |||||||||| |||||||||||||| |||  ||||||||||| |||||||| ||    |||||||||||||||||||||||                  |    
T  25911605 caaaccaatgtatattagctgcttaactgtgtctgtaagatttctagtgtacca----catggaagacaggaaagtaaatggtagggtgaggtgaaatag 25911700  T
Q  189 tgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatc 279  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||         ||||||||||| ||||    
T  25911701 tgaaaggaattttttatgccgaatataatgacagacatggtttgggaagcatgatcaacacacgtaacttgttcttgtaatcggaataaacataagtatc 25911800  T
Q  280 aaacagaaattgcaaattgca 300  Q
    |||||||||||||||| ||||    
T  25911801 aaacagaaattgcaaactgca 25911821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 712 - 816
Target Start/End: Original strand, 25912295 - 25912399
Alignment:
Q  712 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 810  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  25912295 caggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 25912393  T
Q  811 agcaac 816  Q
    ||||||    
T  25912394 agcaac 25912399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 579 - 699
Target Start/End: Original strand, 25912122 - 25912239
Alignment:
Q  579 agtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaac 678  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||   |||||  ||| |||    
T  25912122 agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac 25912218  T
Q  679 taatcttggtaatcaaaatgg 699  Q
    |||||||||| ||||||||||    
T  25912219 taatcttggtgatcaaaatgg 25912239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 715 - 780
Target Start/End: Original strand, 44444772 - 44444837
Alignment:
Q  715 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt 780  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 44444435 - 44444505
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatc 462  Q
    ||||||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  44444435 ttgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaactagatcatc 44444505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Original strand, 25911942 - 25912034
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    ||||| || |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  25911942 ttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 25912034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 44444207 - 44444272
Alignment:
Q  198 ctttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttct 263  Q
    ||||||||  ||||||| |||||  ||||||||||||||||||||  ||||||| |||||||||||    
T  44444207 ctttatatttcgaatattatgactcgcatggtttgggaagcacgagtaacacacgtaacttgttct 44444272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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