View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-10 (Length: 409)
Name: NF1441R-Insertion-10
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 34879341 - 34879681
Alignment:
| Q |
8 |
accaacaaggttggtgtcaactatgatgaagctgaggaaattgtgccagatgaagatgaagaggaagaacccaagttggaattggatcttggccctcagt |
107 |
Q |
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| T |
34879341 |
accaacaaggttggtgtcaactatgatgaagctgaggaaattgtgccagatgaagatgaagaggaagaacccaagttggaattggatcttggccctcagt |
34879440 |
T |
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| Q |
108 |
tttctcttaaggaacaacttgagaaagataaagtaaggttttcttttgaaatggtttctgaatttattttatttgtctctagtag-------tgnnnnnn |
200 |
Q |
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| T |
34879441 |
tttctcttaaggaacaacttgagaaagataaagtaaggttttcttttgaaatggtttctgaatttattttatttgtctctagtagttttttttttttttt |
34879540 |
T |
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| Q |
201 |
nngatgcattggaaattttgttttgtattttaaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttgg |
300 |
Q |
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| T |
34879541 |
tttatgcattggaaattttgttttgtattttaaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttgg |
34879640 |
T |
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| Q |
301 |
aggtacttagcttcccctcaattttgtttttcttgtggaac |
341 |
Q |
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| T |
34879641 |
aggtacttagcttcccctcaattttgtttttcttgtggaac |
34879681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 38371681 - 38371605
Alignment:
| Q |
232 |
aaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttggaggtactt |
308 |
Q |
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| T |
38371681 |
aaaggatgatgaaagtttgagaaaatggaaagagcaacttctgggtagtgttgatatatctgctgttggaggtactt |
38371605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 38371827 - 38371772
Alignment:
| Q |
86 |
gaattggatcttggccctcagttttctcttaaggaacaacttgagaaagataaagt |
141 |
Q |
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| T |
38371827 |
gaattggatcttggtcctcaatttaccctcaaggaacagcttgagaaagataaagt |
38371772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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