View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-12 (Length: 352)
Name: NF1441R-Insertion-12
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 10378616 - 10378956
Alignment:
| Q |
9 |
tacatatccgttgaacttcaaaattgttcatatatttttagtttataaacttctcgctactggttaatagctttacatatgttaattatatattacaaga |
108 |
Q |
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| T |
10378616 |
tacatatccgttgaacttcaaaattgttcatatatttttagtttataaacttctcgctactggttaatagctttacatatcttaattatatattacagga |
10378715 |
T |
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| Q |
109 |
gaaaaacgatcatttttctactctttttattacactaatacttgtaaattatgaacggtgttatatatgtatatataattcaaaatttaatgtctatttt |
208 |
Q |
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| T |
10378716 |
gaaaaacgatcatttttctgctttttttattacactaatacttgtaaattatgaacggtgttatatatgtatatataattcaaaatttaatgtctatttt |
10378815 |
T |
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| Q |
209 |
tttctaaattgttttaagaaccttatttagaaagnnnnnnnnnnncacnnnnnnnnnnnaaatatagcacgtgcaacaatttttaccaccctcttttctc |
308 |
Q |
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| T |
10378816 |
tttctaaattgttttaagaaccttatttaaaaa---aaaaaaaaacacatttttttttaaaatatagaacgtgtaacaatttttaccaccctcttttctc |
10378912 |
T |
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| Q |
309 |
cattgggtgtctttgatactccatgcaccgaccgttgactcgcc |
352 |
Q |
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| T |
10378913 |
catcgggtgtctttgatactccatgcaccgatcgttgactcgcc |
10378956 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 31383650 - 31383605
Alignment:
| Q |
132 |
tttttattacactaatacttgtaaattatgaacggtgttatatatg |
177 |
Q |
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| T |
31383650 |
tttttattgcactaatacatgtaaattatgaacggtattttatatg |
31383605 |
T |
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