View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441R-Insertion-13 (Length: 342)

Name: NF1441R-Insertion-13
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441R-Insertion-13
NF1441R-Insertion-13
[»] chr6 (3 HSPs)
chr6 (9-342)||(21481050-21481376)
chr6 (69-279)||(19700851-19701071)
chr6 (69-167)||(766903-767001)
[»] chr2 (5 HSPs)
chr2 (69-342)||(26661184-26661458)
chr2 (100-279)||(6049616-6049796)
chr2 (67-108)||(26667111-26667152)
chr2 (28-65)||(35729106-35729143)
chr2 (67-111)||(6051977-6052021)
[»] scaffold0500 (1 HSPs)
scaffold0500 (64-150)||(358-444)
[»] chr4 (3 HSPs)
chr4 (100-278)||(13893921-13894100)
chr4 (69-121)||(20856391-20856443)
chr4 (28-64)||(40049550-40049586)
[»] chr3 (1 HSPs)
chr3 (65-310)||(15762179-15762435)
[»] chr1 (4 HSPs)
chr1 (100-184)||(44305833-44305917)
chr1 (67-175)||(22893466-22893574)
chr1 (74-216)||(29845297-29845439)
chr1 (237-279)||(22893647-22893689)
[»] chr7 (7 HSPs)
chr7 (100-183)||(13331874-13331957)
chr7 (100-183)||(13342789-13342872)
chr7 (241-341)||(13331704-13331804)
chr7 (241-341)||(13342619-13342719)
chr7 (68-111)||(13323815-13323858)
chr7 (12-55)||(22707193-22707236)
chr7 (28-57)||(22689772-22689801)
[»] chr5 (4 HSPs)
chr5 (100-183)||(5672345-5672428)
chr5 (241-341)||(5672175-5672275)
chr5 (67-96)||(21635659-21635688)
chr5 (67-96)||(21643906-21643935)
[»] scaffold0586 (2 HSPs)
scaffold0586 (67-184)||(9280-9397)
scaffold0586 (237-279)||(9462-9504)
[»] chr8 (4 HSPs)
chr8 (70-279)||(10637313-10637534)
chr8 (70-184)||(32718167-32718281)
chr8 (237-279)||(32718060-32718102)
chr8 (22-63)||(11923007-11923048)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 21481050 - 21481376
Alignment:
Q  9 gcataattaaggcttaaattgtgcaacattgcacatgttagaaaaacccataaaaatcttagggggtgtttgtttgagggttacaaaaataattcctagg 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  21481050 gcataattaaggcttaaattgtgcaacattgtacatgttagaaaaacccataaa--------ggggtgtttgtttgagggttacaaaaataattcctagg 21481141  T
Q  109 aatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtcttttacccacgtt 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| |||    
T  21481142 aatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttctcaggaaagtcttttacccatgtt 21481241  T
Q  209 ca-ccccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaat 307  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21481242 cacccccatgttctacccatttttcctgtcttttattcccctgagatagcatgggaaagttttattcccagagaataaaaaccatgatctccaacaaaat 21481341  T
Q  308 acctctcctacccttgccattctcgctattctttt 342  Q
    |||||| |||||||||||||||  |||||||||||    
T  21481342 acctcttctacccttgccattcctgctattctttt 21481376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 279
Target Start/End: Original strand, 19700851 - 19701071
Alignment:
Q  69 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 168  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  ||||||  ||||||||||| |    
T  19700851 agggggtgtttgtttgagggtaataaaaataattccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtc 19700950  T
Q  169 aaggaatacatttttctcataaaagtcttttacccacgtt----ca------ccccatgttctacccatttttcc-tgtcttttattcccatgagatagc 257  Q
     ||||||||| ||||| ||  |||| | | ||||||||||    ||      ||||| |||| |||| ||||||| |  |||||||||||| ||||||||    
T  19700951 caggaatacaattttcccaggaaagccatctacccacgttttcccatttcttccccacgttc-acccttttttccatcccttttattcccaagagatagc 19701049  T
Q  258 atgggaaagttttattcccagg 279  Q
     |||||||||||||||||||||    
T  19701050 ttgggaaagttttattcccagg 19701071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 767001 - 766903
Alignment:
Q  69 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgc 167  Q
    |||||| ||||||||||| ||||||| |||| || ||| |||||||||| || |||| | |||| || ||||||||||||| || ||| | ||||||||    
T  767001 agggggcgtttgtttgagagttacaataatagtttctatgaatctaaggatgaaattaagtattcctctgtttggtagatgagagtaagaaaaatatgc 766903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 69 - 342
Target Start/End: Original strand, 26661184 - 26661458
Alignment:
Q  69 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 168  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661184 aggggatgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 26661283  T
Q  169 aaggaatacatttttctcataaaagtcttttacccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagt 267  Q
    |||||||||||||||| ||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26661284 aaggaatacatttttcccaggaaagtcttttacccacgttctcccccacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagt 26661383  T
Q  268 tttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctttt 342  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  26661384 tttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattctttt 26661458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 6049616 - 6049796
Alignment:
Q  100 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtctttt 199  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||| ||  ||||    |     
T  6049616 attcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagcagctc 6049715  T
Q  200 acccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccagg 279  Q
     |||||||||  ||||| || | ||  |||||| || ||||||||||||||  |||||| ||||||| |||||||||||||    
T  6049716 ccccacgttctcccccacgtcccacatattttttctctcttttattcccatctgatagcttgggaaacttttattcccagg 6049796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 26667152 - 26667111
Alignment:
Q  67 ttagggggtgtttgtttgagggttacaaaaataattcctagg 108  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  26667152 ttagggggcgtttgtttgagggttacaaaatttattcctagg 26667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 35729143 - 35729106
Alignment:
Q  28 tgtgcaacattgcacatgttagaaaaacccataaaaat 65  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  35729143 tgtgcaatattgcacatgttagacaaacccataaaaat 35729106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 6052021 - 6051977
Alignment:
Q  67 ttagggggtgtttgtttgagggttacaaaaataattcctaggaat 111  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||    
T  6052021 ttagggggtgtttgtttgagggtttcaaaacttattccaaggaat 6051977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 444 - 358
Alignment:
Q  64 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 278
Target Start/End: Complemental strand, 13894100 - 13893921
Alignment:
Q  100 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtctttt 199  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||  ||||    |     
T  13894100 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagcagctc 13894001  T
Q  200 acccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccag 278  Q
     |||||||||  ||||| |||| ||  |||||| || ||||||||||||||  |||||| ||||||| ||||||||||||    
T  13894000 ccccacgttctcccccacgttccacatattttttctctcttttattcccatctgatagcttgggaaacttttattcccag 13893921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 20856391 - 20856443
Alignment:
Q  69 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctgg 121  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  20856391 agggggtgtttgattgagggttagaaaaatagttcctaggaatctaaggctgg 20856443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 40049586 - 40049550
Alignment:
Q  28 tgtgcaacattgcacatgttagaaaaacccataaaaa 64  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  40049586 tgtgcaatattgcacatgttagacaaacccataaaaa 40049550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 65 - 310
Target Start/End: Complemental strand, 15762435 - 15762179
Alignment:
Q  65 tcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaata 164  Q
    |||||||| ||||||||| |||||||| || || |||||  ||||||||||||||||||| ||||||| ||||||||||||| |||| |  |||||||||    
T  15762435 tcttagggtgtgtttgttagagggttaaaacaaaaattctcaggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaata 15762336  T
Q  165 tgccaaggaatacatttttctcataaaagtcttttacccacgttc-----------accccatgttctacccatttttcctgtcttttattcccatgaga 253  Q
    |||| ||||||||||||||| ||  |||||  |  ||||||||||            ||||| |||| ||| ||||||| |  ||| ||||||||||| |    
T  15762335 tgcctaggaatacatttttcccaggaaagtaatacacccacgttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaa 15762236  T
Q  254 tagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacc 310  Q
    |||| |||||||| |||||||||| |||||  |||||||||||| ||| ||||||||    
T  15762235 tagcttgggaaagatttattcccatggaatggaaaccatgatcttcaataaaatacc 15762179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 44305833 - 44305917
Alignment:
Q  100 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 184  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| | |||||||||||||    
T  44305833 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacatttttc 44305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 22893466 - 22893574
Alignment:
Q  67 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 166  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||    
T  22893466 ttagggggtgtttgtttgagagtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 22893565  T
Q  167 ccaaggaat 175  Q
     ||||||||    
T  22893566 tcaaggaat 22893574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 29845297 - 29845439
Alignment:
Q  74 gtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaagga 173  Q
    |||||||||| ||||||||||||||||||   |||||  ||||| || |||| |||||| ||||||||||||||| |||| |||  ||||||||  ||||    
T  29845297 gtgtttgtttaagggttacaaaaataattttaaggaaagtaaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttagga 29845396  T
Q  174 atacatttttctcataaaagtcttttacccacgttcaccccat 216  Q
    ||| ||||| ||||  |||||| || ||||||||||| |||||    
T  29845397 ataaattttactcaggaaagtcattcacccacgttcatcccat 29845439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 22893647 - 22893689
Alignment:
Q  237 cttttattcccatgagatagcatgggaaagttttattcccagg 279  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccagg 22893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 13331957 - 13331874
Alignment:
Q  100 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||| ||||||||||||||    
T  13331957 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacattttt 13331874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 13342872 - 13342789
Alignment:
Q  100 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  13342872 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 13342789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 13331804 - 13331704
Alignment:
Q  241 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctt 340  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| ||||||||| ||| |||| |||  |  | |||||||||||| ||||||||||    
T  13331804 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattctt 13331705  T
Q  341 t 341  Q
    |    
T  13331704 t 13331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 13342719 - 13342619
Alignment:
Q  241 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctt 340  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| ||||||||| ||| |||| |||  |  | |||||| ||||| ||||||||||    
T  13342719 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgtcattcccgctattctt 13342620  T
Q  341 t 341  Q
    |    
T  13342619 t 13342619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 13323815 - 13323858
Alignment:
Q  68 tagggggtgtttgtttgagggttacaaaaataattcctaggaat 111  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  13323815 tagggggtgtttgtttgagggttacaaaatttattcccaggaat 13323858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 22707236 - 22707193
Alignment:
Q  12 taattaaggcttaaattgtgcaacattgcacatgttagaaaaac 55  Q
    ||||||||||||||  |||||||||||||||| |||||||||||    
T  22707236 taattaaggcttaagctgtgcaacattgcacaggttagaaaaac 22707193  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 22689772 - 22689801
Alignment:
Q  28 tgtgcaacattgcacatgttagaaaaaccc 57  Q
    ||||||||||||||||||||||||||||||    
T  22689772 tgtgcaacattgcacatgttagaaaaaccc 22689801  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 5672428 - 5672345
Alignment:
Q  100 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  5672428 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 5672345  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 5672275 - 5672175
Alignment:
Q  241 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctt 340  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| ||||||||| ||| |||| |||  |  | |||||| ||||| ||||||||||    
T  5672275 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgtcattcccgctattctt 5672176  T
Q  341 t 341  Q
    |    
T  5672175 t 5672175  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 21635659 - 21635688
Alignment:
Q  67 ttagggggtgtttgtttgagggttacaaaa 96  Q
    ||||||||||||||||||||||||||||||    
T  21635659 ttagggggtgtttgtttgagggttacaaaa 21635688  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 21643906 - 21643935
Alignment:
Q  67 ttagggggtgtttgtttgagggttacaaaa 96  Q
    ||||||||||||||||||||||||||||||    
T  21643906 ttagggggtgtttgtttgagggttacaaaa 21643935  T

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Target: scaffold0586 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 9280 - 9397
Alignment:
Q  67 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 166  Q
    |||||||||||||||||||||||   |||||||||| | |||||||||||| ||||||| || ||| ||||||||||||| ||||||  |||||||||||    
T  9280 ttagggggtgtttgtttgagggtagtaaaaataatttcaaggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatg 9379  T
Q  167 ccaaggaatacatttttc 184  Q
     | |||||| || |||||    
T  9380 tccaggaatgcaattttc 9397  T

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Target: scaffold0586; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 9462 - 9504
Alignment:
Q  237 cttttattcccatgagatagcatgggaaagttttattcccagg 279  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccagg 9504  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 279
Target Start/End: Original strand, 10637313 - 10637534
Alignment:
Q  70 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 169  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  10637313 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcc 10637412  T
Q  170 aggaatacatttttctcataaaagtcttttacccacgtt------ca------ccccatgttctacccatttttcc-tgtcttttattcccatgagatag 256  Q
    |||||| || ||||| ||  |||| | | ||||||||||      ||      ||||| |||| |||| ||||||| |  ||||||||||||||||||||    
T  10637413 aggaatgcaattttcccaggaaagccatctacccacgttttcccccatttcttccccacgttc-acccttttttccatcccttttattcccatgagatag 10637511  T
Q  257 catgggaaagttttattcccagg 279  Q
    | |||||||||||||||||||||    
T  10637512 cttgggaaagttttattcccagg 10637534  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 32718281 - 32718167
Alignment:
Q  70 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 169  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  32718281 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtct 32718182  T
Q  170 aggaatacatttttc 184  Q
    |||||| || |||||    
T  32718181 aggaatgcaattttc 32718167  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 32718102 - 32718060
Alignment:
Q  237 cttttattcccatgagatagcatgggaaagttttattcccagg 279  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  32718102 cttttattcccatgagatggcttgggaaagttttattcccagg 32718060  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 11923048 - 11923007
Alignment:
Q  22 ttaaattgtgcaacattgcacatgttagaaaaacccataaaa 63  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  11923048 ttaacttgtgcaatattgcacatgttagacaaacccataaaa 11923007  T

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