View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-14 (Length: 324)
Name: NF1441R-Insertion-14
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 4108240 - 4108064
Alignment:
| Q |
8 |
actatatgcccacaaaatgtatagatacgatataagcgtttataagggctttttatttcataagatactttatgaaatactgtatgaggtgttggtatag |
107 |
Q |
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| T |
4108240 |
actatatgcccacaaaatgtatagatacgatataagggtttataagggctttt-atttcataagatactttatgaaatactgtatgaggtgttggtatag |
4108142 |
T |
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| Q |
108 |
tagcaacgatgttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataaatgtacata |
185 |
Q |
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| T |
4108141 |
tagcaacgatgttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataaatgtacata |
4108064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 207 - 324
Target Start/End: Complemental strand, 34779519 - 34779402
Alignment:
| Q |
207 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
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| Q |
307 |
aatttcaaagggctgtgt |
324 |
Q |
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| T |
34779419 |
aatttcaaagggccgtgt |
34779402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 207 - 324
Target Start/End: Original strand, 34682858 - 34682975
Alignment:
| Q |
207 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||| |||||| ||||||||| |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
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| Q |
307 |
aatttcaaagggctgtgt |
324 |
Q |
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| T |
34682958 |
aatttcaaagggctgtgt |
34682975 |
T |
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