View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-15 (Length: 276)
Name: NF1441R-Insertion-15
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 47918693 - 47918435
Alignment:
| Q |
8 |
aaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtg-agaaaatggatagnnnnnn |
106 |
Q |
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| T |
47918693 |
aaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaatatacataaaa-----------aa |
47918605 |
T |
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| Q |
107 |
ntataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctgaattat |
206 |
Q |
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| T |
47918604 |
atataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctgaattat |
47918505 |
T |
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| Q |
207 |
gccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttg |
276 |
Q |
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| T |
47918504 |
gccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttg |
47918435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 29918473 - 29918694
Alignment:
| Q |
8 |
aaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtgagaaaatggatagnnnnnnn |
107 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||| ||||| ||||||||||||| | |
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| T |
29918473 |
aaagaatacatcggcaataaaa--gagtttatacataaaaagtctt-cacttcacatagaattggacataaataggtgtgagaaaatggaaa---ataat |
29918566 |
T |
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| Q |
108 |
tataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagct---taattagtacctgaatt |
204 |
Q |
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| T |
29918567 |
ttgaatcttgatttatattactaattctctaactgaatttttttataatttcatagatcacagcagcaatttcaaaagtttagtacttagtacctgaatt |
29918666 |
T |
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| Q |
205 |
atgccggaatggtcaccctttgagtgct |
232 |
Q |
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| T |
29918667 |
atgccagcatggtcaccccttgagtgct |
29918694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 29918750 - 29918797
Alignment:
| Q |
229 |
tgcttttcgaacctttataggctcaacaggttcatctcccctattttg |
276 |
Q |
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| T |
29918750 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttg |
29918797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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