View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-17 (Length: 268)
Name: NF1441R-Insertion-17
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 35523532 - 35523791
Alignment:
| Q |
9 |
tcatgactgcatggttagcatacagccgtggagtaactccatccaaggatatcacaaaaacatcaaccttcggagttttcaatgtatggcaatacgagaa |
108 |
Q |
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| T |
35523532 |
tcatgactgcatggttagcatacagccgtggagtaactccatccaaggatgtcacaaaaacatcaaccttcggagttttcaatgtatggcaatacgagaa |
35523631 |
T |
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| Q |
109 |
taagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggaccttatactggagtttccgatggacacatcatc |
208 |
Q |
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| T |
35523632 |
taagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggaccttatactggagtttccgatggacacatcatc |
35523731 |
T |
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| Q |
209 |
aaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacagg |
268 |
Q |
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| T |
35523732 |
aaatggcaccatcatcaaaaccgttgggaggactttgccgtcacttcttctccacacagg |
35523791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 35517934 - 35518193
Alignment:
| Q |
9 |
tcatgactgcatggttagcatacagccgtggagtaactccatccaaggatatcacaaaaacatcaaccttcggagttttcaatgtatggcaatacgagaa |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |||||||||||| | |||| ||||||||||||| |
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| T |
35517934 |
tcatgactgcatggttagcatacaaccgtggagtaacaccatccaaggatgtcacagaaacatcagccttcggagtttccgatgtttggcaatacgagag |
35518033 |
T |
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| Q |
109 |
taagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggaccttatactggagtttccgatggacacatcatc |
208 |
Q |
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| T |
35518034 |
tatggttccgattgataacgatgccgttggaccggagagtcttgccttcgatcctaacggtgaaggaccttataccggcatttccaatggacacatcatc |
35518133 |
T |
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| Q |
209 |
aaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacagg |
268 |
Q |
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||||||||||||| ||| |||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35518134 |
aaatggcaccgtcatgagaaccgttgggtggactttgccgtcacttcttcttcacacagg |
35518193 |
T |
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