View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-2 (Length: 823)
Name: NF1441R-Insertion-2
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-2 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 9 - 565
Target Start/End: Original strand, 140044 - 140600
Alignment:
| Q |
9 |
tatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccctgatgttcataagctcccaatattgtgttaaaatcaccaataaa |
108 |
Q |
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| T |
140044 |
tatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccctgatgttcataagctcccaatattgtgttaaaatcaccaataaa |
140143 |
T |
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| Q |
109 |
gttccaagggaggctgaactgacttaacaaattaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcatatattgctgccaatgct |
208 |
Q |
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| T |
140144 |
gttccaagggaggctgaactgacttaacaaattaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcatatattgctgccaatgct |
140243 |
T |
|
| Q |
209 |
agctccttaccgttatcagagatagagaaggaaacatgttgatcatcaatttggattatgttcgggttaaggtgggttagacacaaacaccagaggttag |
308 |
Q |
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| T |
140244 |
agctccttaccgttatcagagatagagaaggaaacatgttgatcatcaatttggattatgttcgggttaaggtgggttagacacaaacactagaggttag |
140343 |
T |
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| Q |
309 |
gtatgctgttttctcttacattcatagcaaagggtttgtaattttgtatgaggaaccaatttttaggtaagtcttcaaatctcatccaaggctctgcaat |
408 |
Q |
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| T |
140344 |
gtatgttgttttctcttacattcatagcaaagggtttgtaattttgtctgaggaaccaatttttaggtaagtcttcaaatctcatccaaggctctgcaat |
140443 |
T |
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| Q |
409 |
gagaattatatcaggtttgttattttgtattaggtttttgagtgccaatcttgtaggttgattggctaagcctcttaggttccaataaaggatcttcatc |
508 |
Q |
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| T |
140444 |
gagaattatatcaggttcgttattttgtattaggtttttgagtgccaatcttgtaggttgattggctaagcctcttaggttccaataaaggatcttcatc |
140543 |
T |
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| Q |
509 |
taaaaggtttggggtgtgcagcctttgatctggtagagtaaaggttagaaggcgtag |
565 |
Q |
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| T |
140544 |
taaaaggtttggggtgtgcagcctttgatctggtagagtaaaggttagaaggcgtag |
140600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 603 - 823
Target Start/End: Original strand, 140638 - 140859
Alignment:
| Q |
603 |
ctgatgtgttacaatcttgaagggagggttgtccaaggtctgtgcttgactatcaacatgttccttctctagattctctaataa-ttgaacttcagccgg |
701 |
Q |
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| T |
140638 |
ctgatgtgttacaatcttgaagggagggttgtccaaggtctgtgcttgactatcaacatgttccttctctagattctctaataaattgaacttcagccgg |
140737 |
T |
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| Q |
702 |
ctcatcttctgcaatatttgcccatgactgtttcaaaaattctgcatttttcctgactatatcttctgtagtttcttgctcttcctcctcttcgtcctct |
801 |
Q |
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| T |
140738 |
ctcatcttctgcaatatttgcccatgactgtttcaaaaattctgcatttttcttgactctatcttctgtaatttcttgctcttcctcctcttcctcctct |
140837 |
T |
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| Q |
802 |
cgtaagttattcccctctccca |
823 |
Q |
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| T |
140838 |
ggtaagttattcccctctccca |
140859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 3565966 - 3566154
Alignment:
| Q |
9 |
tatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccctgatgttcataagctcccaatattgtgttaaaatcaccaataaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3565966 |
tatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccctgatgttcataagctcccaatattgtgttaaaatcaccagtaaa |
3566065 |
T |
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| Q |
109 |
gttccaagggaggctgaactgacttaacaaattaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcatatattg |
197 |
Q |
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| T |
3566066 |
gttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcatatattg |
3566154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 287
Target Start/End: Original strand, 9751769 - 9751893
Alignment:
| Q |
163 |
ccttctcttcaagtaacaagttgatgcatatattgctgccaatgctagctccttaccgttatcagagatagagaaggaaacatgttgatcatcaatttgg |
262 |
Q |
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| T |
9751769 |
ccttctcttcaagtaacaagttgatgcatagactgcaaccattgcaaactccttaccattatcaatcaaagaaaaagaaacatgttggtcatcaataagt |
9751868 |
T |
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| Q |
263 |
attatgttcgggttaaggtgggtta |
287 |
Q |
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| T |
9751869 |
attatcttagggttaaggtgagtta |
9751893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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