View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441R-Insertion-3 (Length: 741)
Name: NF1441R-Insertion-3
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-3 |
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| [»] chr6 (9 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 9 - 741
Target Start/End: Complemental strand, 31024987 - 31024256
Alignment:
| Q |
9 |
aaaacttgagtccccaaaagcactattctaatgttttataggtaaagttttgtgtctataatttacatagtttcgatgtgggactgctgaactccagaat |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31024987 |
aaaacttgagtccccaaaagcactattctaatcttttataggtaaagttttgtgtctataatttacatagtttcgatttgggactgctgaactccagaat |
31024888 |
T |
|
| Q |
109 |
ggtatacacacatgcctcttccttctctgtaagtattagagacaaatacacctcttcacgttttaaccaaattttgaacaatttacaattttctatatgc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| | |
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| T |
31024887 |
ggtatacacacatgcctcttccttctctgtaagtattagagacaaatacacctcttctcattttaaccaatttttgaacaatttacaattttctata--c |
31024790 |
T |
|
| Q |
209 |
ttcattcattgattccctccttaacgattttgctccaagatcattccttaaaaaa-taaacaaatacttgtttgactaaattagaacataacaatgtata |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024789 |
ttcattcattgattccctccttaacgattttgctccaagatcattccttaaaaaaataaacaaatacttgtttgactaaattagaacataacaatgtata |
31024690 |
T |
|
| Q |
308 |
attaatgcacatgcaagtgaactagtttccttagtaactaacttctttaaaattattccaaaaatgaacatgcatgttaatagattagagctatggcaag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31024689 |
attaatgcacatgcaagtgaactagtttccttagtaactaacttctttaaaattattccaaaa-tgaacatgcatgttaatagattagagctatggcaag |
31024591 |
T |
|
| Q |
408 |
ttttgttttaagcaaaacttgttt-atcttttggtactggatttagaacatgatttaagtttaacgttgtttatgtaggatgtggatttgaaggcttatc |
506 |
Q |
| |
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|||||||||||||| || |||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31024590 |
ttttgttttaagcataatttgttttatcttttggtagtggatttagaacatgaattaaggttaacgttgtttatgtaggatgtggatttgaaggcttatc |
31024491 |
T |
|
| Q |
507 |
gactttagttggtagtaatcccagtgttggtaagagtactctatggtttgatgcttttgtacatgaactaagggttgtcatcctttttcagttgtgtgat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024490 |
gactttagttggtagtaatcccagtgttggtaagagtactctatggtttgatgcttttgtacatgaactaagggttgtcatcctttttcagttgtgtgat |
31024391 |
T |
|
| Q |
607 |
gatatatggtaacctagactgaatgtagttatattcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgt |
706 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
31024390 |
gatatatgataacctagactgaatgtagttatattcagcacattatgacattgtttagacctttgaacttgttcaattttggatatttagaacaagttgt |
31024291 |
T |
|
| Q |
707 |
ctgataggaaattgaacatcaatcctctttttatg |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
31024290 |
ctgataggaaattgaacatcaatcctctttttatg |
31024256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 31072878 - 31072395
Alignment:
| Q |
9 |
aaaacttgagtccccaaaagcactattctaatgttttataggtaaagttttgtgtctataatttacatagtttcgatgtgggactgctgaactccagaat |
108 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
31072878 |
aaaacatgagtccctaaaagaactattct-----tttataggtaaagttgtgtgtttataatttacatagttttgatgtgggactgctcaactccagaat |
31072784 |
T |
|
| Q |
109 |
ggtatacacacatgcctcttccttctctgtaagtattagagacaaatacacctcttcacgttttaaccaaattttgaac-aatttacaattttctatatg |
207 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| |||| |
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| T |
31072783 |
agtatacacac--gccttttccttctctgtaagtattagagacaaatacacctcttctcgttttaaacaaattttgaacaaatttacaattttc--tatg |
31072688 |
T |
|
| Q |
208 |
cttcattca-ttgattccctccttaacgattttgctccaagatcattccttaaaaaataaacaaatacttgtttgactaaattag---aacataacaatg |
303 |
Q |
| |
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||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||| ||| || | | |||||||| || ||| ||||||| |||| |
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| T |
31072687 |
cttcattcatttgattccctccttgaggattttgctccaagatcattcctgaaaaataaaaaaattgcatgtttgaccaaggtagaacaacataataatg |
31072588 |
T |
|
| Q |
304 |
tataattaatgcacatgcaagtgaactagtttccttagtaactaacttctttaaaattattccaaaaatgaacatgcatgttaatagattagagctatgg |
403 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| ||||||||||| ||| || ||||||| |||||||| |||||||||||||| |||||| | |
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| T |
31072587 |
tataattaatgcacatgcaagggaactagtttcctccgtaactaacttgttt-aagttattcc-aaaatgaa----catgttaatagatt--agctattg |
31072496 |
T |
|
| Q |
404 |
caagttttgttttaagcaaaacttgtttatcttttggtactggatttagaacatgatttaagtttaacgttgtttatgtaggatgtggatttgaaggctt |
503 |
Q |
| |
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||| |||| ||||||||| |||||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||| ||||||||| |||| |||||||| |
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| T |
31072495 |
caaattttattttaagcataacttgtttatcttttggtagtggatttggaacatga-ttaaggttaactttgtttacgtaggatgtagattagaaggctt |
31072397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 610 - 737
Target Start/End: Complemental strand, 31071494 - 31071369
Alignment:
| Q |
610 |
atatggtaacctagactgaatgtagttatattcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctg |
709 |
Q |
| |
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|||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
31071494 |
atatggtaacctggactgactgtagttatattcaccacattatgatattgtttagacctttgaacttgttcaattttg--aatttagaacaagttgtctg |
31071397 |
T |
|
| Q |
710 |
ataggaaattgaacatcaatcctctttt |
737 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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| T |
31071396 |
atagaaaattgaacatcaatcctctttt |
31071369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 640 - 741
Target Start/End: Complemental strand, 31027966 - 31027865
Alignment:
| Q |
640 |
ttcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctcttttta |
739 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
31027966 |
ttcagcacattatgacattgttttgacctttgaacttgttcgattttggatatatagaacaagttgtttgataggaaattgaacatcaatcctcttttta |
31027867 |
T |
|
| Q |
740 |
tg |
741 |
Q |
| |
|
|| |
|
|
| T |
31027866 |
tg |
31027865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 31065401 - 31065305
Alignment:
| Q |
40 |
tgttttataggtaaagttttgtgtctataatttacatagtttcgatgtgggactgctgaactccag---aatggtatacacacatgcctcttccttc |
133 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||| |
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| T |
31065401 |
tgttttataggtaactttttgtgtctattagttacagagtttcgatgtgggactgctgaactctagaataatggtatacatacacgcctcttccttc |
31065305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 565 - 616
Target Start/End: Complemental strand, 31072383 - 31072332
Alignment:
| Q |
565 |
gtacatgaactaagggttgtcatcctttttcagttgtgtgatgatatatggt |
616 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31072383 |
gtacatgaactaaggtttgtcatcctttttcagttgtgtgatgatatatggt |
31072332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 621
Target Start/End: Complemental strand, 31030315 - 31030278
Alignment:
| Q |
584 |
tcatcctttttcagttgtgtgatgatatatggtaacct |
621 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31030315 |
tcatcctttttcacttgtgtgatgatatatggtaacct |
31030278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 455
Target Start/End: Complemental strand, 31040321 - 31040265
Alignment:
| Q |
399 |
tatggcaagttttgttttaagcaaaacttgtttatcttttggtactggatttagaac |
455 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
31040321 |
tatggcaggttttattgtaagcaaaacttgtttatcttttgattgtggatttagaac |
31040265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 734
Target Start/End: Original strand, 21217209 - 21217281
Alignment:
| Q |
660 |
tttagacctttaaacttgttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctct |
734 |
Q |
| |
|
|||||| |||| |||||||| |||||||||| |||||| ||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
21217209 |
tttagaactttgaacttgttaaattttggat--ttagaataagatgtttgagaggaaattgaacatcaatgctct |
21217281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 482
Target Start/End: Complemental strand, 33559896 - 33559597
Alignment:
| Q |
153 |
aatacacctcttcacgttttaaccaaattttgaacaatttacaattttctatatgcttcattcattgattccctccttaacgattttgctccaagatcat |
252 |
Q |
| |
|
||||||||||||| ||| ||| |||||| |||||| |||||||||||||| | |||||||||||||||||||||||| | || |||||| ||||||||| |
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|
| T |
33559896 |
aatacacctcttctcgtcttacccaaatattgaaccatttacaattttctct--gcttcattcattgattccctccttgaggaatttgcttcaagatcat |
33559799 |
T |
|
| Q |
253 |
tccttaaaaaataaacaaatacttgtttgactaa---attagaacataacaatgtataattaatgcacatgcaagtgaactagtttccttagtaactaac |
349 |
Q |
| |
|
|||| |||| ||| || || |||||||||||| || | ||||||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
33559798 |
tcctgaaaa---aaaaaattaattgtttgactaaagtataacaacataataacgta----taatgcacatgcaagtgaactagtttc------------- |
33559719 |
T |
|
| Q |
350 |
ttctttaaaattattccaaaaatgaacatgcatgttaatagattagagctatggcaagttttgttttaagcaaaacttgtttatcttttggtactggatt |
449 |
Q |
| |
|
|| |||||||||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33559718 |
----tttaaattattcc-aaaatgaa----cgtgttaatagatt--agctatggcaaattttattttaagcataacttgtttatcttttggtagtggata |
33559630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 33561260 - 33561198
Alignment:
| Q |
31 |
ctattctaatgttttataggtaaagttttgtgtctataatttacatagtttcgatgtgggact |
93 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| | ||| ||| ||||||||||||||||| |
|
|
| T |
33561260 |
ctattctattattttataggtaaagtttcgtgtctgttattgacacagtttcgatgtgggact |
33561198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 7617 - 7682
Alignment:
| Q |
42 |
ttttataggtaaagttttgtgtctataatttacatagtttcgatgtgggactgctgaactccagaa |
107 |
Q |
| |
|
|||||||| |||| |||| |||| || ||||||| |||||||||||||||| ||| ||||| |||| |
|
|
| T |
7617 |
ttttatagctaaatttttctgtcaattatttacacagtttcgatgtgggacagcttaactcaagaa |
7682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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