View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-5 (Length: 609)
Name: NF1441R-Insertion-5
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 9 - 609
Target Start/End: Original strand, 9407848 - 9408449
Alignment:
| Q |
9 |
agaaaactataaaacatgaagcttcatagatatgttgggaagatctcatactaacatcaacatctgatgtttttgtttgcttcaggtctggtggagattt |
108 |
Q |
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| T |
9407848 |
agaaaactataaaacatgaagcttcatagatatgttgggaagatctcatactaacatcaacatctgatgtttttgtttgcttcaggtctggtggagattt |
9407947 |
T |
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| Q |
109 |
tgacatatcagctcagcgtgtagctgcttcaaaccctctattgaaggatgcaattgttgatgctctgcgccaaacagagtgaaaactgaaaa-ttgaagt |
207 |
Q |
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| T |
9407948 |
tgacatatcagctcagcgtgtagctgcttcaaaccctctattgaaggatgcaattgttgatgctctgcgccaaacagagtgaaaactgaaaaattgaagt |
9408047 |
T |
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| Q |
208 |
tatatattattaatctatgattaggagaaattgtgttacaagtcagtcttttttatttcatttactttttctcaaataatcaaaactattaatttttgga |
307 |
Q |
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| T |
9408048 |
tatatattattaatctatgattaggagaaattgtgttacaagtcagtcttttttatttcatttactttttctcaaataatcaaaactatcaatttttgga |
9408147 |
T |
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| Q |
308 |
tattaaattatccgataaaattattggagcaattttatactttttgtgcgaattatcgaacactcaatgatacaagtcactttaatgcaactcattatta |
407 |
Q |
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| T |
9408148 |
tattaaattatccgataaaattattggagcaattttatactttttgtgcgaattatcgaacactcaatgatacaagtcactttaatgcaactcattatta |
9408247 |
T |
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| Q |
408 |
tagtatgataattgtagttttgtactttctacgtattatagtattctagttctatacttactacgtatccgaaatttaattttcattagtgcatcagcat |
507 |
Q |
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| T |
9408248 |
tagtatgataattgtagttttgtactttctacgtattatagtattctagttctatacttactacgtatccgaaatttaattttcattagtgcatcagcat |
9408347 |
T |
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| Q |
508 |
tacgtagtgaatgatgtaagtaacttttaatcaagttcattcacatggtcttatgagaagcttcgtgaaagcttccgtctttttattatgctgtgattct |
607 |
Q |
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| T |
9408348 |
tacgtagtgaatgatgtaagtaacttttaatcaagttcattcacattgtcttatgagaagcttcgtgaaagcttccatctttttattatgctgtgattct |
9408447 |
T |
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| Q |
608 |
tg |
609 |
Q |
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| T |
9408448 |
tg |
9408449 |
T |
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