View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441R-Insertion-6 (Length: 607)
Name: NF1441R-Insertion-6
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 9 - 602
Target Start/End: Original strand, 7682918 - 7683508
Alignment:
| Q |
9 |
ccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttcttatcag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7682918 |
ccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttcttaccag |
7683017 |
T |
|
| Q |
109 |
gtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctaggaattcg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7683018 |
gtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctaggaattcg |
7683117 |
T |
|
| Q |
209 |
aatggtccaacttcaaattgctaccttggctcattcgtttgattgggagcttgaaaatgggctaaatgcaaaagacataaacatggatgaatcttttggc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7683118 |
aatggtccaacttcaaattgctaccttggctcattcgtttaattgggagcttgaaaatgggataaatgcaaaagacataaacatggatgaatcttttggc |
7683217 |
T |
|
| Q |
309 |
ttaggtattcagagagctgtgccattattagtgcaccctaaaccaaggctcttgccacatgtgtactcgtcatgtttctgattttgaaatttgc-tttta |
407 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |
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| T |
7683218 |
ttaggtattcaaagagctgtgccattattagtgcaccctaaaccaaggctcttgccacatgtgtactcgtcatgtttttgattttgaaattttcttttta |
7683317 |
T |
|
| Q |
408 |
tgcaagttgcatttccctttcctatgnnnnnnnnnattaaattttaaataaacaagtttgtagtcaggcacgcatccactcatgtggtattggggacaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
7683318 |
tgcaagttgcatttccctttcctatg--ttttgttattaaattttaaataaacaagtttgtagtcaggcacgcatccactcatgtggtattgggg-caat |
7683414 |
T |
|
| Q |
508 |
tgcctccactaatgtttatattatatgtgttgaagtttgcttttacgcaagttgcattcccctttcctatgttttattattaaattttaaataaa |
602 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7683415 |
tgcctccaccaatgtttat-ttatatgtgttgaagtttgctttttcgcaagttgcattcccctttcctatgttttattattaaattttaaataaa |
7683508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 36 - 420
Target Start/End: Original strand, 7683543 - 7683926
Alignment:
| Q |
36 |
gtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttcttatcaggtggtgagaattgtgatgttgatgtga |
135 |
Q |
| |
|
|||||||||||||||| || || || || ||||||||||| ||||| ||||||||| || ||||||||| |||||||||||| ||| |||||||||||| |
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|
| T |
7683543 |
gtatgggccatagctcatggcccaggaaaatgggttgatc-attaatgttcaaacctgaaaggttcttactaggtggtgagaactgtaatgttgatgtga |
7683641 |
T |
|
| Q |
136 |
agggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctaggaattcgaatggtccaacttcaaattgctacctt |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | |||| |||||||||| || |||||||||||| |||||||||||||||||||||||||||| || || |
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|
| T |
7683642 |
agggaaatgattttgaggttatactttttggtgttggatgtagaatatgcgcgggattgaatctatgaattcgaatggtccaacttcaaattgccacttt |
7683741 |
T |
|
| Q |
236 |
ggctcattcgtttgattgggagcttgaaaatgggctaaatgc-aaaagacataaacatggatgaatcttttggcttaggtattcagagagctgtgccatt |
334 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |||||||||| |||| ||||||||| |
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|
| T |
7683742 |
ggctcattcgtttaattgggagcttgaaaatgggctaaatgcaaaaaaacataaacatggacgaagcttttggcctaggtattcaaagagttgtgccatt |
7683841 |
T |
|
| Q |
335 |
attagtgcaccctaaaccaaggctcttgccacatgtgtactcgtcatgtttctgattttgaaatttgcttttatgcaagttgcatt |
420 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
7683842 |
-ttagtgcaccctaaaccgaggctcttgccacatgtgtactcgtcatgtttttgattttggaatttgcttttatgcaagttgcatt |
7683926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 9 - 393
Target Start/End: Original strand, 7663679 - 7664063
Alignment:
| Q |
9 |
ccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttcttatcag |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||| |||| | || |||||||||||||||| |||||||||| || ||||||||| ||| |
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|
| T |
7663679 |
ccaaagggttcaactcttttggttaatgtatgggccatcgctcgagacccaaaagaatgggttgatccattagagttcaaacctgaaaggttcttaccag |
7663778 |
T |
|
| Q |
109 |
gtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctaggaattcg |
208 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||| |||||| |||| |
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|
| T |
7663779 |
gtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctagggcttcg |
7663878 |
T |
|
| Q |
209 |
aatggtccaacttcaaattgctaccttggctcattcgtttgattgggagcttgaaaatgggctaaatgcaaaagacataaacatggatgaatcttttggc |
308 |
Q |
| |
|
||||||||||||| || ||||| |||| ||||| ||||||||||| ||||||||||| || ||||| | | || |||||||||||| || ||| |
|
|
| T |
7663879 |
tatggtccaacttctaacagctacactggcccattcatttgattgggaacttgaaaatggactcaatgctggaaaaatgaacatggatgaaggttatggg |
7663978 |
T |
|
| Q |
309 |
ttaggtattcagagagctgtgccattattagtgcaccctaaaccaaggctcttgccacatgtgtactcgtcatgtttctgatttt |
393 |
Q |
| |
|
|| | || |||||||||||||||| || ||||||||||| || |||| |||||| ||||||||||| ||||||||||||| |
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|
| T |
7663979 |
ttgacactgcaacgagctgtgccattattggtacaccctaaacctagactctcgccacacgtgtactcgtcttgtttctgatttt |
7664063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 7620213 - 7619831
Alignment:
| Q |
9 |
ccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttcttatcag |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||| |||| | || |||||||||||||||| |||||||||| || ||||||||| ||| |
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|
| T |
7620213 |
ccaaagggttcaactcttttggtcaatgtatgggccatcgctcgagacccaaaagaatgggttgatccattagagttcaaacctgaaaggttcttaccag |
7620114 |
T |
|
| Q |
109 |
gtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctaggaattcg |
208 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||| |||||| |||| |
|
|
| T |
7620113 |
gtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctagggcttcg |
7620014 |
T |
|
| Q |
209 |
aatggtccaacttcaaattgctaccttggctcattcgtttgattgggagcttgaaaatgggctaaatgcaaaagacataaacatggatgaatcttttggc |
308 |
Q |
| |
|
||||||||||||| || ||||| | || ||||| ||||||||||| ||||||||||| || ||||| | | || |||||||||||| || ||| |
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|
| T |
7620013 |
tatggtccaacttctaacagctacactagcccattcatttgattgggaacttgaaaatggactcaatgctggaaaaatgaacatggatgaaggttatggg |
7619914 |
T |
|
| Q |
309 |
ttaggtattcagagagctgtgccattattagtgcaccctaaaccaaggctcttgccacatgtgtactcgtcatgtttctgatt |
391 |
Q |
| |
|
|| |||| ||||||||||||||| |||||||||||||| || |||| |||||| ||||||||||| ||||| ||||| |
|
|
| T |
7619913 |
ttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcgccacacgtgtactcgtcttgtttttgatt |
7619831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 7669384 - 7669644
Alignment:
| Q |
17 |
ttcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttcttatcaggtggtgag |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| | | || |||||||||||||||| |||||||| || |||||||||| |||||||||| |
|
|
| T |
7669384 |
ttcaactcttttggttaatgtatgggccattgctcgtgatccaaaagaatgggttgatccattaggattcaaacctgaaaggttcttattaggtggtgag |
7669483 |
T |
|
| Q |
117 |
aattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctaggaattcgaatggtcc |
216 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||| ||| || |||| ||||| | |
|
|
| T |
7669484 |
aagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtgttgggatgagtcttgggcttcgtatggtac |
7669583 |
T |
|
| Q |
217 |
aacttcaaattgctaccttggctcattcgtttgattgggagcttgaaaatgggctaaatgc |
277 |
Q |
| |
|
| |||| || ||||| | || ||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
7669584 |
agcttctaacagctacactagcccattcatttgattgggaacttgaaaatgggctcaatgc |
7669644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 497
Target Start/End: Original strand, 7683443 - 7683546
Alignment:
| Q |
392 |
ttgaaatttgcttttatgcaagttgcatttccctttcctatgnnnnnnnnnattaaattttaaataaacaagtttgtagtcaggcacgcatccactcatg |
491 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| || || ||||||||||| |
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|
| T |
7683443 |
ttgaagtttgctttttcgcaagttgcattcccctttcctatgttttatt--attaaattttaaataaatgggtttgtagtcatgcgcggatccactcatg |
7683540 |
T |
|
| Q |
492 |
tggtat |
497 |
Q |
| |
|
|||||| |
|
|
| T |
7683541 |
tggtat |
7683546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 45481276 - 45481358
Alignment:
| Q |
108 |
ggtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctgg |
190 |
Q |
| |
|
||||||||||| | |||||||||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45481276 |
ggtggtgagaagtttgatgttgatgttaggggaaatgactttgaggtgataccttttggtgctggacgtagaatatgtgctgg |
45481358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Original strand, 12325803 - 12325852
Alignment:
| Q |
492 |
tggtattggggacaattgcctccactaatgtttatattatatgtgttgaa |
541 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
12325803 |
tggtattggaggaaattgcccccactaatgtttatgttatatgtgttgaa |
12325852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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