View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-7 (Length: 476)
Name: NF1441R-Insertion-7
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 4179915 - 4180377
Alignment:
| Q |
7 |
caaaaattccttaataaatgggtacaaatacacaacatgttacctacaacctcaaaagaagaaattaacacatccatatttaactaccctcgtctaaaaa |
106 |
Q |
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| T |
4179915 |
caaaaattccttaataaatgggtacaaatacacaacatgttacctacaacctcaaaagaagaaattaacacatccatatttaactaccctcgtctaaaaa |
4180014 |
T |
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| Q |
107 |
atcacaattttctctcttcagaggacttaatcaaccatactcaaaacaaaaacagagttcaaagtattgtattcaaaatcactactaagaatgtaaaatt |
206 |
Q |
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| T |
4180015 |
atcacaattttctctcttcagaggacttaatcaaccatactcaaaacaaaaacagagttcaaagtattgtattcaaaatcactactaaaaatgtaaaatt |
4180114 |
T |
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| Q |
207 |
tagcaaagaaatgtggagggaattggccatgttttgcattgaagaagtggaacaaaagctagacacaaaaataggttctagtttcactttggttgttaaa |
306 |
Q |
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| T |
4180115 |
tagcaaagaattgtggagggaattggccatgttttgcattgaagaagtggaacaaaagctagacacaaaaataggttctagtttcactttggttgttaaa |
4180214 |
T |
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| Q |
307 |
gaatccttggaggtcattgaggtagaaagtgtcacaaagagtggatacactttgaatgaattgggcattaagaatcaaattaattgcattgcatcatgga |
406 |
Q |
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| T |
4180215 |
gaatccttggaggtcattgaggtagaaagtgtcacaaagagtggatacactttgaatgaattgggcattaagaatcaaattaattgcattgcatcatgga |
4180314 |
T |
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| Q |
407 |
atgattttggagtgtatgaggttgtttttcatgaagaaaataagcctgttcatgtttcttgtt |
469 |
Q |
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| T |
4180315 |
atgattttggagtgtatgaggtagtttttcatgaagaaaataagcctgttcatgtttcttgtt |
4180377 |
T |
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