View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-8 (Length: 472)
Name: NF1441R-Insertion-8
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 82 - 310
Target Start/End: Complemental strand, 40353076 - 40352849
Alignment:
| Q |
82 |
aactaatttattcagatttatattattgtttcttttgtaagggtgatcaatgatcattgttacttctacagaaaatagatctgcctataagtacaatatt |
181 |
Q |
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| T |
40353076 |
aactaatttattcagatttatattattgtttcttttgtaagggtgatcaatgatcgttgttacttctacaggaaacagatctgtctataagtacaatatt |
40352977 |
T |
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| Q |
182 |
cactcaagtttcagaaccttctattaaaagatgattttgttatactaattgacaaagacacctcgttaaattatggaatttatcaggtatgttaatgtga |
281 |
Q |
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| T |
40352976 |
cactca-gtttcagaaccttttattaaaagatgattttgttatactaattgacaaagacgcctcgctaaattatggaatttatcaggtatgttaatgcga |
40352878 |
T |
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| Q |
282 |
cagtgactgtgcttcatagaacactaaca |
310 |
Q |
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| T |
40352877 |
caatgactgtgcttcatagaacactaaca |
40352849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 380 - 472
Target Start/End: Complemental strand, 40352779 - 40352687
Alignment:
| Q |
380 |
tattgactcttagaacactaatacataaaacataaaaggaggttagaagacaacattgacgtatttcttactacaatctccattttgcacatg |
472 |
Q |
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| T |
40352779 |
tattgactcttagaacactaatacataaaacatgaaaggaggttagaagataacattgacgtatttcttactacaatctccattttgcacatg |
40352687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 40353123 - 40353087
Alignment:
| Q |
9 |
gcagtgaaatacgtaatgtctttaacaatatctatat |
45 |
Q |
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| T |
40353123 |
gcagtgaaatacgtaatgtctttaacaatatctatat |
40353087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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