View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441R-Insertion-9 (Length: 440)
Name: NF1441R-Insertion-9
Description: NF1441R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441R-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 34859395 - 34859825
Alignment:
| Q |
9 |
atttccaccctaattaaaggtgtttctccgtctttaacacacatactgaaagaacaaatttctatatcagtttttgatgttgaaaaaacttggtttgctt |
108 |
Q |
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| T |
34859395 |
atttccaccctaattaaaggtgtttctctgtctttaacacacatactgaaagaacaaatttctatatcagtttttgatgttgaaaaaacttggtttgttt |
34859494 |
T |
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| Q |
109 |
ccatggtgagcatgatccacagacagaagaaaggtgtatgtcaacatcaggactcatgtacccgaaaagctacttcaaattaacagtgaaactagaacag |
208 |
Q |
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| T |
34859495 |
ctatggtgagcatgatccacagacagaagaaaggtgtatgtcaacatcaggactcatgtacccgaaaagctagttcaaattaacagtgaaactagaacag |
34859594 |
T |
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| Q |
209 |
tacaggcaactaatgatcataacaagctaaaggtgtatctgtacttctcagctccagttctagcgttcatctacagaaatcatgaattctctcaaagtta |
308 |
Q |
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| T |
34859595 |
tacaggcaactaatgatcataacaagctaaaggtgtatctgtacttctcagctccagttcta-aattcatctacagaaatcatgaattctctcaaagtta |
34859693 |
T |
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| Q |
309 |
gccagggttcactccttccaactagtgcagaaaatcttggaaatcgtagatttgggttcatggttagttaattcataaatgtagtatgttttggtctctt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34859694 |
gccagggttcactccttccaactagtgcagaaaatcttggaaatcgtagatttgggttcatggttagttaattcataaatgtagtatgttttagtctctt |
34859793 |
T |
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| Q |
409 |
agttgtgttgtgttatgctcgtttcaagtgca |
440 |
Q |
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| T |
34859794 |
agttgtgttgtgttatgcttgtttcaagtgca |
34859825 |
T |
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