View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_100 (Length: 249)
Name: NF1441_high_100
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_100 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 43100182 - 43099940
Alignment:
| Q |
7 |
ctgagatgaaaccaggaattatcaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaatatatgagatcaccctataatttgaatt |
106 |
Q |
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| T |
43100182 |
ctgacatgaaaccaggaattattaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaatatatgagatcaccctataatttgaatt |
43100083 |
T |
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| Q |
107 |
aatgattaaaatttttagatataagatttttggtgttgatatatttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatga |
206 |
Q |
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| T |
43100082 |
aatgattaaaatttttagatataagatttttggtgtttatatatttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatga |
43099983 |
T |
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| Q |
207 |
aatagacactgaattctttggtaccacgcaaaataagcctaat |
249 |
Q |
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| T |
43099982 |
aatagacactgaattctttggtaccacgcaaaataagcctaat |
43099940 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 40870951 - 40871065
Alignment:
| Q |
133 |
tttttggtgttgatat--atttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatgaaatagacactgaattctttggtac |
230 |
Q |
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| T |
40870951 |
tttttggtgttgatattaatttcatttgggaattgtagctttcaaacatagaagatcacaaaggaacccatgatgaaatagacattgagttccttggtac |
40871050 |
T |
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| Q |
231 |
cacgcaaaataagcc |
245 |
Q |
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| T |
40871051 |
tacacaagataagcc |
40871065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 40870379 - 40870425
Alignment:
| Q |
32 |
caatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
78 |
Q |
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| T |
40870379 |
caatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
40870425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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