View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_115 (Length: 240)
Name: NF1441_high_115
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_115 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 17259085 - 17259169
Alignment:
| Q |
22 |
atgcacaaaggtaggtctagtatttaaactaatgataagggataatgtaacaaacctacgataagggagaacgtaacaaaccaaa |
106 |
Q |
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| T |
17259085 |
atgcacaaaggtaggtctagtatttaaactaatgataagggataatgtaacgaacctacgataagggagaacgtaacaaaccaaa |
17259169 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 17259226 - 17259271
Alignment:
| Q |
188 |
tatccaccaaatatcattcactaacgatttcttgatctcttttcaa |
233 |
Q |
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| T |
17259226 |
tatccaccaaatataattcactaacgatttcttgatctcttttcaa |
17259271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 17254267 - 17254314
Alignment:
| Q |
56 |
ataagggataatgtaacaaacctacgataagggagaacgtaacaaacc |
103 |
Q |
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| T |
17254267 |
ataagagagaatataacaaacctaagataagggagaacgtaacaaacc |
17254314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 17254456 - 17254493
Alignment:
| Q |
65 |
aatgtaacaaacctacgataagggagaacgtaacaaac |
102 |
Q |
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| T |
17254456 |
aatgtaacaaacctaagataagggagaacgaaacaaac |
17254493 |
T |
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