View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_118 (Length: 239)
Name: NF1441_high_118
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_118 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 34934421 - 34934643
Alignment:
| Q |
17 |
aacaatcgcttaaactagcggaatataactttcatcttgacctttctcttccaattttccctctccatcatataaataaaacacaacattaccttctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34934421 |
aacaatcgcttaaactagcggaatataactttcatcttgacctttctcttccaattttccctctccatcatataaataaaacacaacattaccttctctt |
34934520 |
T |
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| Q |
117 |
ctccctcaagtttccttcctgttcagccgcggcgtattaccgcggccgaccttcttaattatcatcatcctctttacacacacaaaaccnnnnnnnctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
34934521 |
ctccctcaagtttccttcctgttcagccgcggcgtattaccgcggccgaccttcttaactatcatcatcctctttacacacacaaaaccaaaaaaactat |
34934620 |
T |
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| Q |
217 |
agaaagattaaataaataaaaac |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
34934621 |
agaaagattaaataaataaaaac |
34934643 |
T |
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