View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_12 (Length: 466)
Name: NF1441_high_12
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Complemental strand, 34859836 - 34859395
Alignment:
| Q |
6 |
aggagcagagatgcacttgaaacaagcataacacaacacaactaagagaccaaaacatactacatttatgaattaactaaccatgaacccaaatctacga |
105 |
Q |
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| T |
34859836 |
aggagaagagatgcacttgaaacaagcataacacaacacaactaagagactaaaacatactacatttatgaattaactaaccatgaacccaaatctacga |
34859737 |
T |
|
| Q |
106 |
tttccaagattttctgcactagttggaaggagtgaaccctggctaactttgagagaattcatgatttctgtagatgaatttagaactggagctgagaagt |
205 |
Q |
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| T |
34859736 |
tttccaagattttctgcactagttggaaggagtgaaccctggctaactttgagagaattcatgatttctgtagatgaatttagaactggagctgagaagt |
34859637 |
T |
|
| Q |
206 |
acagatacacctttagcttgttatgatcattagttgcctgtactgttctagtttcactgttaatttgaagtagcttttcgggtacatgagtcctgatgtt |
305 |
Q |
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| T |
34859636 |
acagatacacctttagcttgttatgatcattagttgcctgtactgttctagtttcactgttaatttgaactagcttttcgggtacatgagtcctgatgtt |
34859537 |
T |
|
| Q |
306 |
gacatacacctttcttctgtctgtggatcatgctcaccatggaagcaaaccaagttttttcaacatcaaaaactgatatagaaatttgttctttcagtat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859536 |
gacatacacctttcttctgtctgtggatcatgctcaccatagaaacaaaccaagttttttcaacatcaaaaactgatatagaaatttgttctttcagtat |
34859437 |
T |
|
| Q |
406 |
gtgtgttaaagacagagaaacacctttaattagggtggaaat |
447 |
Q |
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| T |
34859436 |
gtgtgttaaagacagagaaacacctttaattagggtggaaat |
34859395 |
T |
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