View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_120 (Length: 238)
Name: NF1441_high_120
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_120 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1162771 - 1162990
Alignment:
| Q |
1 |
caaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttatgtagagttgaaaatctcctaataattataaagatggtttgcca |
100 |
Q |
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| T |
1162771 |
caaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttatgtagagttgaaaatctcctaataattataaagatagtttgcca |
1162870 |
T |
|
| Q |
101 |
gttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataataaaaacagatccaca |
200 |
Q |
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| T |
1162871 |
gttttgcttcgtatgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataataaaaacagatccaca |
1162970 |
T |
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| Q |
201 |
aaatatttacatccatccag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
1162971 |
aaatatttacatccatccag |
1162990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 40412338 - 40412251
Alignment:
| Q |
84 |
ataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttata |
171 |
Q |
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| T |
40412338 |
ataaagatggtttgccagttttgcttcttacgatacttagtagattaatcagaactcaagaacaaatagagtgaactatttatttata |
40412251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 39400746 - 39400652
Alignment:
| Q |
90 |
atggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataa |
184 |
Q |
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| T |
39400746 |
atggtttgctagttttgcttcttacaatacgcaagagattaatcaaagctcaagtagaaatagagtgaaccatttatttataacaaacaatataa |
39400652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40412429 - 40412365
Alignment:
| Q |
1 |
caaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttatgtagagtt |
65 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
40412429 |
caaatgaaagaaaggacatgtatgagaagcagccacactatactttcaactatttatgtaaagtt |
40412365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39400819 - 39400763
Alignment:
| Q |
1 |
caaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttat |
57 |
Q |
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|||||||||||||||| |||| |||||||||||||||| ||||||| | |||||||| |
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| T |
39400819 |
caaatgaaagaaaggaggcatgtgagaagcagccacacaatactttcaactatttat |
39400763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 38988459 - 38988414
Alignment:
| Q |
124 |
tagattaatcaaaactcaagtacaaatggagtgaactatttgttta |
169 |
Q |
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| T |
38988459 |
tagattaatcagaactcaagaacaaatagagtgaactatttattta |
38988414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 40419225 - 40419145
Alignment:
| Q |
84 |
ataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactattt |
164 |
Q |
| |
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| T |
40419225 |
ataaagatggtttgctagttttacttcttagtgtatgtaatagattaatcaaagctcaagtccaaaaagagtaaactattt |
40419145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 40419325 - 40419289
Alignment:
| Q |
3 |
aatgaaagaaaggacgcatatgagaagcagccacact |
39 |
Q |
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| T |
40419325 |
aatgaaagaaaggacgcatattagaagcagcaacact |
40419289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25911296 - 25911356
Alignment:
| Q |
1 |
caaatgaaagaaaggacgcatatgagaagcagccacactatactttaatctatttatgtag |
61 |
Q |
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||||||||||||||||||||| ||||||||| ||| |||||||||| | ||||||||||| |
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| T |
25911296 |
caaatgaaagaaaggacgcatctgagaagcaaccagactatactttcaattatttatgtag |
25911356 |
T |
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