View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_128 (Length: 236)

Name: NF1441_high_128
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_128
NF1441_high_128
[»] chr1 (9 HSPs)
chr1 (14-220)||(9475088-9475297)
chr1 (14-142)||(8924886-8925014)
chr1 (14-142)||(9359400-9359528)
chr1 (14-142)||(9335662-9335790)
chr1 (21-140)||(8936534-8936653)
chr1 (24-140)||(8946031-8946144)
chr1 (24-142)||(9306712-9306830)
chr1 (21-142)||(8960055-8960176)
chr1 (14-89)||(9244985-9245060)
[»] chr3 (1 HSPs)
chr3 (14-142)||(9168554-9168682)
[»] chr6 (1 HSPs)
chr6 (28-105)||(15912697-15912774)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 9475297 - 9475088
Alignment:
Q  14 cacagattgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactatt 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9475297 cacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactatt 9475198  T
Q  114 ggtagcctcacatgtttgatgatga---tgatacactaatatcaaaataacaaccgtagtttggaggaagcatacggatgattccattagagcaggagaa 210  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9475197 ggtagcctcacatgtttgatgatgatgatgatacactaatatcaaaataacaaccgtagtttggaggaagcatacggatgattccattagagcaggagaa 9475098  T
Q  211 cggttattct 220  Q
     |||||||||    
T  9475097 gggttattct 9475088  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 8924886 - 8925014
Alignment:
Q  14 cacagattgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactatt 113  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||  ||| |||||||||||||||||||||||||| |||||||||| || || |  |    
T  8924886 cacaggttgttggatcattcttaagtcgaaacggatattttatgttgttgattttgccacatgaagaaggtggacaatatgtttggttactagtatttgt 8924985  T
Q  114 ggtagcctcacatgtttgatgatgatgat 142  Q
      | || ||||||||||||||||||||||    
T  8924986 aattgcatcacatgtttgatgatgatgat 8925014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 9359400 - 9359528
Alignment:
Q  14 cacagattgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactatt 113  Q
    ||||| ||||||| |||||| | |||||||| ||||||  ||||||||||| |||||| ||||||||||||||||||| ||||||||||||  || || |    
T  9359400 cacagcttgttgggtcattcataagtcgaaaaggatgtgatatgtttgtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagt 9359499  T
Q  114 ggtagcctcacatgtttgatgatgatgat 142  Q
      | || ||||||||||||||||||||||    
T  9359500 aattgcatcacatgtttgatgatgatgat 9359528  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 9335662 - 9335790
Alignment:
Q  14 cacagattgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactatt 113  Q
    ||||| ||| ||| |||||||| ||||||||||||||||| |||||  ||| |||||| ||||||||||||||||||| ||||| ||||||  || || |    
T  9335662 cacaggttgctgggtcattcttaagtcgaaacggatgtttgatgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagt 9335761  T
Q  114 ggtagcctcacatgtttgatgatgatgat 142  Q
      | || ||||||||||||||||||||||    
T  9335762 aattgcatcacatgtttgatgatgatgat 9335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 8936534 - 8936653
Alignment:
Q  21 tgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactattggtagcc 120  Q
    ||||||||||| ||| |||||||| |||||| |||||||||||| |||||| |||||||||||||||||   |||||||||| || || |  |  | ||     
T  8936534 tgttggatcatccttaagtcgaaatggatgtgttatgtttgtgattttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaattgca 8936633  T
Q  121 tcacatgtttgatgatgatg 140  Q
    ||||||||||||||||||||    
T  8936634 tcacatgtttgatgatgatg 8936653  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 8946031 - 8946144
Alignment:
Q  24 tggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactattggtagcctca 123  Q
    |||||||||||| ||||| || ||||  ||||||||  ||| |||||||||||||||||| ||||||   ||||  ||| |||||||||| || || |||    
T  8946031 tggatcattcttaagtcggaagggatactttatgttgctgattttgccacatgaagaagggggacaa---gttttattaatattactatttgttgcatca 8946127  T
Q  124 catgtttgatgatgatg 140  Q
    |||||||||||||||||    
T  8946128 catgtttgatgatgatg 8946144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 9306830 - 9306712
Alignment:
Q  24 tggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactattggtagcctca 123  Q
    |||||||||||  |||||||| ||||||||||||||| ||| | |||||||||| || | |||||||| ||||||||||||| || || |  | || | |    
T  9306830 tggatcattctgaagtcgaaaaggatgttttatgtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataa 9306731  T
Q  124 catgtttgatgatgatgat 142  Q
    ||| |||||||||||||||    
T  9306730 catctttgatgatgatgat 9306712  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 8960055 - 8960176
Alignment:
Q  21 tgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactattggtagcc 120  Q
    |||||| |||| ||| |||||||| ||||||  |||||||   | |||||||||||||||||||||||||| |||||||||| || || |  |  | ||     
T  8960055 tgttgggtcatccttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgca 8960154  T
Q  121 tcacatgtttgatgatgatgat 142  Q
    ||||||||||||||||||||||    
T  8960155 tcacatgtttgatgatgatgat 8960176  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 9245060 - 9244985
Alignment:
Q  14 cacagattgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggaca 89  Q
    ||||| ||||||| |||||| | ||||||||||||||||| |||||  ||| ||| ||||||||||||||||||||    
T  9245060 cacagcttgttgggtcattcataagtcgaaacggatgtttgatgttgctgatttttccacatgaagaaggtggaca 9244985  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 9168554 - 9168682
Alignment:
Q  14 cacagattgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactatt 113  Q
    ||||| ||||||||||||| || ||||| |||||||||||||||||| | | ||||||||||||||||||||||||   | ||||||||| | || || |    
T  9168554 cacagtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccacatgaagaaggtggacataatttttggttatcactattact 9168653  T
Q  114 ggtagcctcacatgtttgatgatgatgat 142  Q
     || || ||||||| ||||||||||||||    
T  9168654 agttgcatcacatgcttgatgatgatgat 9168682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 15912774 - 15912697
Alignment:
Q  28 tcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttatta 105  Q
    |||||||| |||||||| ||||||||||||||  ||| ||| || |||||||||| |||||||  ||||| |||||||    
T  15912774 tcattcttaagtcgaaatggatgttttatgttgctgattttaccgcatgaagaagttggacaaaatgttttgttatta 15912697  T

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