View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_130 (Length: 236)

Name: NF1441_high_130
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_130
NF1441_high_130
[»] chr3 (3 HSPs)
chr3 (148-232)||(15993056-15993140)
chr3 (113-142)||(51614235-51614264)
chr3 (16-44)||(15994129-15994157)
[»] scaffold0192 (1 HSPs)
scaffold0192 (148-232)||(19153-19238)
[»] chr5 (1 HSPs)
chr5 (148-232)||(6702034-6702119)
[»] chr6 (5 HSPs)
chr6 (148-206)||(20910836-20910894)
chr6 (148-206)||(20925284-20925342)
chr6 (113-146)||(8637443-8637476)
chr6 (113-146)||(31971551-31971584)
chr6 (113-145)||(1918464-1918496)
[»] chr1 (2 HSPs)
chr1 (148-216)||(41862802-41862870)
chr1 (113-146)||(6000149-6000182)
[»] chr4 (5 HSPs)
chr4 (113-146)||(836241-836274)
chr4 (168-232)||(2304243-2304308)
chr4 (113-146)||(19908714-19908747)
chr4 (113-146)||(25978339-25978372)
chr4 (113-146)||(56551598-56551631)
[»] chr2 (2 HSPs)
chr2 (113-148)||(41778950-41778985)
chr2 (113-146)||(21558812-21558845)
[»] chr7 (1 HSPs)
chr7 (146-216)||(30063289-30063359)
[»] chr8 (1 HSPs)
chr8 (113-146)||(42208475-42208508)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 15993140 - 15993056
Alignment:
Q  148 ataaattttgtttatgtactctgactttttaaattccatttcaacatattttgttttattgtgtatcaattattccggctcataa 232  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||    
T  15993140 ataaattttgtttatgtattctgactttttaaattccattccaacatatttccttttattgtgtatcaattattccggttcataa 15993056  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 51614264 - 51614235
Alignment:
Q  113 gaacctcggaccttgcatatattttgcatt 142  Q
    ||||||||||||||||||||||||||||||    
T  51614264 gaacctcggaccttgcatatattttgcatt 51614235  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 15994157 - 15994129
Alignment:
Q  16 aatgcaatgaaggtgtagaggactgaatg 44  Q
    |||||||||||||||||||||||||||||    
T  15994157 aatgcaatgaaggtgtagaggactgaatg 15994129  T

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Target: scaffold0192 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 19238 - 19153
Alignment:
Q  148 ataaattttgtttatgtactctgactttttaaattccatttcaa-catattttgttttattgtgtatcaattattccggctcataa 232  Q
    |||||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||| | ||||||||||||||||    
T  19238 ataaattttgtttatgtattctgactttttacattccattccaaacatattttgttttattgtgtattagttattccggctcataa 19153  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 6702034 - 6702119
Alignment:
Q  148 ataaattttgtttatgtactctgactttttaaattccatttcaacatattttgttttattgtgtatc-aattattccggctcataa 232  Q
    ||||||||| ||| |||| | ||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||    
T  6702034 ataaattttatttgtgtattttgattttttaaattccattccaacatatttcgttttattgtgtatcaaattattctggctcataa 6702119  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 20910894 - 20910836
Alignment:
Q  148 ataaattttgtttatgtactctgactttttaaattccatttcaacatattttgttttat 206  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||||||||| |||||||    
T  20910894 ataaattttgtttatgtattttgattttttaaattccattccaacatatttcgttttat 20910836  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 20925342 - 20925284
Alignment:
Q  148 ataaattttgtttatgtactctgactttttaaattccatttcaacatattttgttttat 206  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||||||||| |||||||    
T  20925342 ataaattttgtttatgtattttgattttttaaattccattccaacatatttcgttttat 20925284  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 8637443 - 8637476
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  8637443 gaacctcggaccttgcatatattatgcattgtcc 8637476  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 31971584 - 31971551
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  31971584 gaacctcggaccttgcatatattatgcattgtcc 31971551  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 1918464 - 1918496
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtc 145  Q
    ||||||||||||||||||||||| |||||||||    
T  1918464 gaacctcggaccttgcatatattatgcattgtc 1918496  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 41862870 - 41862802
Alignment:
Q  148 ataaattttgtttatgtactctgactttttaaattccatttcaacatattttgttttattgtgtatcaa 216  Q
    |||||||||||| ||||| ||| | |||||||||| |||| ||||||||||  ||||||||||||||||    
T  41862870 ataaattttgttcatgtattctaattttttaaatttcattccaacatatttcattttattgtgtatcaa 41862802  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 6000149 - 6000182
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  6000149 gaacctcggaccttgcatatattatgcattgtcc 6000182  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 836241 - 836274
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||||||||||||||    
T  836241 gaacctcggaccttgcatatattttgcattgtcc 836274  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 2304243 - 2304308
Alignment:
Q  168 ctgactttttaaattccatttcaacatattttgttttattgtgtatc-aattattccggctcataa 232  Q
    |||| |||||||||||||||| ||||||||| |||||||||| |||| |||||||  |||||||||    
T  2304243 ctgattttttaaattccattttaacatatttcgttttattgtttatcaaattattttggctcataa 2304308  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 19908747 - 19908714
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  19908747 gaacctcggaccttgcatatattatgcattgtcc 19908714  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 25978372 - 25978339
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  25978372 gaacctcggaccttgcatatattatgcattgtcc 25978339  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 56551598 - 56551631
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  56551598 gaacctcggaccttgcatatattatgcattgtcc 56551631  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 41778950 - 41778985
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtccaa 148  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41778950 gaacctcggaccttgcatatattatgcattgtccaa 41778985  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 21558812 - 21558845
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  21558812 gaacctcggaccttgcatatattatgcattgtcc 21558845  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 30063289 - 30063359
Alignment:
Q  146 caataaattttgtttatgtactctgactttttaaattccatttcaacatattttgttttattgtgtatcaa 216  Q
    ||||||||||||||| |||  ||| | |||| | ||||||||  || ||||||||||||||||||||||||    
T  30063289 caataaattttgtttttgtcttctaatttttcagattccattctaatatattttgttttattgtgtatcaa 30063359  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 42208475 - 42208508
Alignment:
Q  113 gaacctcggaccttgcatatattttgcattgtcc 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  42208475 gaacctcggaccttgcatatattatgcattgtcc 42208508  T

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