View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_136 (Length: 233)

Name: NF1441_high_136
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_136
NF1441_high_136
[»] chr4 (3 HSPs)
chr4 (7-233)||(30053464-30053700)
chr4 (7-233)||(30038049-30038285)
chr4 (6-219)||(30065431-30065644)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 30053700 - 30053464
Alignment:
Q  7 agaaaatgatgacgaagaaacgtacatataagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgctta---atgtatccta 103  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||    
T  30053700 agaaaatgatgacgacgaaacgtacatatgagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgcttaaatatgtgtccta 30053601  T
Q  104 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaatatgtaaaggga-------tgatgagcatgttacgtgacttaat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||| |||||||||||||||    
T  30053600 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaaaatgtaaagggatgatgattgatgagcaagttacgtgacttaat 30053501  T
Q  197 actgagagaattgctacataaaattgcagtggctctt 233  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30053500 actgtgagaattgctacataaaagtgcagtggctctt 30053464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 30038285 - 30038049
Alignment:
Q  7 agaaaatgatgacgaagaaacgtacatataagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgcttaa---tgtatccta 103  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||    
T  30038285 agaaaatgatgacgacgaaacgtacatatgagaaattcgatgagctcaattaaattagttcagctgtgtgcaaatttaagttgcttaaatatgtatccta 30038186  T
Q  104 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaatatgtaaagggatg-------atgagcatgttacgtgacttaat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||| |||||||||||||||    
T  30038185 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaaaatgtaaagggatgatgattgatgagcaagttacgtgacttaat 30038086  T
Q  197 actgagagaattgctacataaaattgcagtggctctt 233  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30038085 actgtgagaattgctacataaaagtgcagtggctctt 30038049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 30065644 - 30065431
Alignment:
Q  6 aagaaaatgatgacgaagaaacgtacatataagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgcttaatgtatcctaat 105  Q
    ||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||    
T  30065644 aagaaaatgatgatgaggaaacgtacatatgagaaatctgatgagctcaattaaattagttcagtggtgtgcatatttaatttgcttaatgtgtcctaat 30065545  T
Q  106 atagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaatatgtaaagggatgatgagcatgttacgtgacttaatactgagaga 205  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||  ||||||||||||||||||| ||||||||| ||| |||||| ||||    
T  30065544 atagtgtgggaaggtattgaaaagtaatggcaaaatttgaatatcttcggttataatgtaaagggatgatgagcttgttacgtgtcttgatactgtgaga 30065445  T
Q  206 attgctacataaaa 219  Q
    || |||||||||||    
T  30065444 atggctacataaaa 30065431  T

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