View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_139 (Length: 232)

Name: NF1441_high_139
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_139
NF1441_high_139
[»] chr1 (10 HSPs)
chr1 (11-219)||(30902044-30902252)
chr1 (43-206)||(7798000-7798163)
chr1 (45-206)||(8054896-8055057)
chr1 (45-206)||(28705448-28705609)
chr1 (45-206)||(46018940-46019101)
chr1 (45-206)||(49572576-49572737)
chr1 (123-191)||(9886236-9886304)
chr1 (92-171)||(33695738-33695817)
chr1 (101-171)||(46077503-46077573)
chr1 (43-219)||(37752689-37752863)
[»] chr5 (1 HSPs)
chr5 (43-179)||(41549921-41550057)
[»] chr8 (3 HSPs)
chr8 (43-198)||(29514944-29515099)
chr8 (43-206)||(24785285-24785448)
chr8 (45-206)||(35195546-35195707)
[»] chr3 (3 HSPs)
chr3 (43-186)||(44938195-44938338)
chr3 (153-217)||(25905870-25905934)
chr3 (108-164)||(34544079-34544135)
[»] chr6 (2 HSPs)
chr6 (13-197)||(20678980-20679167)
chr6 (119-206)||(6262259-6262346)
[»] scaffold0702 (1 HSPs)
scaffold0702 (45-206)||(7461-7622)
[»] chr7 (2 HSPs)
chr7 (45-206)||(6792533-6792694)
chr7 (43-206)||(6205539-6205702)
[»] chr4 (3 HSPs)
chr4 (47-206)||(30970853-30971012)
chr4 (43-198)||(24246270-24246417)
chr4 (103-194)||(54908142-54908234)
[»] chr2 (1 HSPs)
chr2 (123-206)||(218411-218494)
[»] scaffold0012 (1 HSPs)
scaffold0012 (43-165)||(107038-107160)
[»] scaffold0536 (1 HSPs)
scaffold0536 (103-171)||(2428-2496)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 30902252 - 30902044
Alignment:
Q  11 acaagagggcaaaag-cccaaaagaagaaaaataaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagacta 109  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30902252 acaagagggcaaaaggcccaaaagaagaaaaa-aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagacta 30902154  T
Q  110 ttgagttctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctcacc 209  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30902153 ttgagctctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctcacc 30902054  T
Q  210 atgtatgatg 219  Q
    ||||||||||    
T  30902053 atgtatgatg 30902044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 7798163 - 7798000
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |    
T  7798163 aaactaaacaattacacgaacatttctgggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagta 7798064  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  7798063 aaattccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 7798000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 8054896 - 8055057
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  8054896 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 8054995  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  8054996 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 8055057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 28705609 - 28705448
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  28705609 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 28705510  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  28705509 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 28705448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 46018940 - 46019101
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  46018940 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 46019039  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  46019040 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 46019101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 49572576 - 49572737
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  49572576 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 49572675  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  49572676 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 49572737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 9886236 - 9886304
Alignment:
Q  123 gaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcac 191  Q
    |||| ||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||| ||||    
T  9886236 gaggtgtctccaaaacaataaaattccaagaatttatggtaaggttgaaattagcaagtcaatcagcac 9886304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 33695738 - 33695817
Alignment:
Q  92 tcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaa 171  Q
    |||||| | |||||||||||||| ||  || ||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  33695738 tcatcaaagaggagactattgagctcattatgaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaa 33695817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 46077573 - 46077503
Alignment:
Q  101 aggagactattgagttctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaa 171  Q
    |||| ||||||||| ||  |||||||||||||||||| |  ||||||| | ||||||||||||||||||||    
T  46077573 aggaaactattgagctcattaggaggggtctccaaaatagtaaaattctatgaatccatggtaaggctgaa 46077503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 37752863 - 37752689
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||||| |||||||||||| ||| || | |||| |||||| |||| |||||||  | |||| ||| ||||| |  || | |||| |||||||||||| |    
T  37752863 aaactaatcaactaaacgaatatttctag-catgtaagtccagaaa-tatcatcgaagaggaaactgttgagctgactcgaagggatctccaaaacaata 37752766  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctcaccatgtatgatg 219  Q
    ||||||||||||||  ||||||| ||||||  ||||| ||||||  ||||| | || | ||||| ||| ||||||||    
T  37752765 aaattccaagaatctgtggtaagactgaaaccagcaagtcaatcaacacttttgttgctttctcgccaagtatgatg 37752689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 41549921 - 41550057
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||||||||||||||| |||||| || |||||||||| |||||||||||||||| | ||||||||||| || || ||||||||||||||||||||||||    
T  41549921 aaactaaacaactaaacaaacatttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaaca 41550020  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaa 179  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  41550021 aaatcccaagaatccacggtaaggctgaaattagcaa 41550057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 29514944 - 29515099
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    |||||||| ||||||||||||||| || |||||||| |||||  ||||||||||| | |||||||||||||| ||  ||| |||||||||||||||||||    
T  29514944 aaactaaataactaaacgaacattcctaggcatgcaggtcccataaatatcatcaaagaggagactattgagctcattagaaggggtctccaaaacaaca 29515043  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctatt 198  Q
    |||| |||||||||||||||||||||| |||||||||  ||||| |||||| ||||    
T  29515044 aaatcccaagaatccatggtaaggctggaattagcaagccaatcagcacttttatt 29515099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 24785448 - 24785285
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |    
T  24785448 aaactaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagta 24785349  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  24785348 aaattccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 24785285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 35195546 - 35195707
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  35195546 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 35195645  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  35195646 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 35195707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 44938338 - 44938195
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||| |||||| | ||||||||| || | ||||||||||||| ||||||||||| |  |||||||||| || ||||||||| |||||| ||||||||||    
T  44938338 aaactgaacaaccacacgaacattcctagacatgcaagtcccggaaatatcatcaaaagggagactattaagctctctaggaagggtctacaaaacaaca 44938239  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatc 186  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  44938238 aaattccaagaatccatggtaaggttgaaattagcaagtcaatc 44938195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 25905934 - 25905870
Alignment:
Q  153 aatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctcaccatgtatga 217  Q
    ||||||| | || |||||||||||||| ||||||||||||||| || ||||| ||||| ||||||    
T  25905934 aatccattgaaatgctgaaattagcaagtcaatctgcacttctgttgccttcacaccaagtatga 25905870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 34544135 - 34544079
Alignment:
Q  108 tattgagttctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaa 164  Q
    ||||||| || |||| || ||| ||||||| || |||||||||||||||||||||||    
T  34544135 tattgagctcactagaagaggtatccaaaagaataaaattccaagaatccatggtaa 34544079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 20678980 - 20679167
Alignment:
Q  13 aagagggcaaaagcccaaaagaagaaaaataaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattg 112  Q
    ||||||||||||  ||| ||| ||||||| |||||||||||||||||||||||| || |||||||||| |||| ||||||||||| ||||||||||        
T  20678980 aagagggcaaaaatccagaaggagaaaaaaaaactaaacaactaaacgaacattcctaggcatgcaagccccggaaatatcatcaaataggagact---- 20679075  T
Q  113 agttctctaggaggggtctcc-------aaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctat 197  Q
     ||   |||||||||||||||       ||||||| |||| || ||||||||||||||||  ||||||||||||  |||||| |||||||||    
T  20679076 ggtatactaggaggggtctccaaaacaaaaaacaaaaaaaatcgaagaatccatggtaagattgaaattagcaagccaatcttcacttctat 20679167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 6262346 - 6262259
Alignment:
Q  119 ctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    ||||||||| ||| ||||||||||||||||||| ||| ||  ||||||||||||||| ||| |||||| ||||||||||| |||||||    
T  6262346 ctaggagggttcttcaaaacaacaaaattccaataattcacagtaaggctgaaattaacaagtcaatcagcacttctattgccttctc 6262259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 7461 - 7622
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  7461 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 7560  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  7561 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 6792533 - 6792694
Alignment:
Q  45 actaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaa 144  Q
    ||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||    
T  6792533 actaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaa 6792632  T
Q  145 attccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||| |||||||||||||||||||| || ||||  ||||| |||||||| || |||||||    
T  6792633 attccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc 6792694  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 6205702 - 6205539
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |    
T  6205702 aaactaaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagta 6205603  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||||||| ||||||||||||||||| || || ||||  ||||| |||||||| || |||||||    
T  6205602 aaattccatgaatccatggtaaggctaaagttggcaagccaatcagcacttctgttgccttctc 6205539  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 30971012 - 30970853
Alignment:
Q  47 taaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaacaaaat 146  Q
    ||||||| || ||||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |||||    
T  30971012 taaacaattacacgaacatttctaggcatacaagcaccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaat 30970913  T
Q  147 tccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    |||| |||||||||||||||||||| |||||||  |||||  ||||||| || |||||||    
T  30970912 tccatgaatccatggtaaggctgaagttagcaagccaatcaacacttctgttgccttctc 30970853  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 24246270 - 24246417
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||| |||||||||||||||||| || | |||||||| |||||||||||||||| | |||||||||||||| ||  || ||  ||||||        ||    
T  24246270 aaactgaacaactaaacgaacattcctagacatgcaagccccgaaaatatcatcaaagaggagactattgagctcgttaagaaaggtctc--------ca 24246361  T
Q  143 aaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctatt 198  Q
    |||| ||||||||| || |||||||||||||||| || |||||| |||||| ||||    
T  24246362 aaatcccaagaatctatagtaaggctgaaattagtaagtcaatcagcacttgtatt 24246417  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 54908142 - 54908234
Alignment:
Q  103 gagactattgagttctctaggaggggtctccaaaacaacaaaattccaagaatccatggt-aaggctgaaattagcaattcaatctgcacttc 194  Q
    |||||||||||| || ||||||||||||||||||| |  ||||||||| ||||||||||| ||||||||| || ||||  ||||| |||||||    
T  54908142 gagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaaggctgaagttggcaagccaatcagcacttc 54908234  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 218411 - 218494
Alignment:
Q  123 gaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttctc 206  Q
    ||||||||| |||||||||||||| ||||||||   |||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  218411 gaggggtcttcaaaacaacaaaatcccaagaatatgtggtaaggctgaaattagcaagccaatcagcacttctattgccttctc 218494  T

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Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 107038 - 107160
Alignment:
Q  43 aaactaaacaactaaacgaacattgcttggcatgcaagtcccgaaaatatcatcagataggagactattgagttctctaggaggggtctccaaaacaaca 142  Q
    ||||||||||| || | ||||||| || ||||| ||||  ||  | || |||||| | |||||||||||||| || ||||||||||||||||||| |  |    
T  107038 aaactaaacaattacatgaacatttctaggcatacaagctccagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagta 107137  T
Q  143 aaattccaagaatccatggtaag 165  Q
    |||||||| ||||||||||||||    
T  107138 aaattccatgaatccatggtaag 107160  T

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Target: scaffold0536 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 2496 - 2428
Alignment:
Q  103 gagactattgagttctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaa 171  Q
    |||||||||||| || |||| |||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  2496 gagactattgagctcactagaaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaa 2428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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