View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_14 (Length: 463)
Name: NF1441_high_14
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 181 - 450
Target Start/End: Original strand, 50337541 - 50337813
Alignment:
| Q |
181 |
tgaaagtatctccttttggtatgatgtatgaatgacttgcaatattct---ttatagaactttatcttgatttgattttattgttagatgatcaatcggg |
277 |
Q |
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| T |
50337541 |
tgaaagtatctccttttggtatgatgtatgaatgacttgcaattttcttctttatagaactttatcttgatttgattttattgttagatgatcaaccggg |
50337640 |
T |
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| Q |
278 |
cgattctttgatcaatgagtgtgggactgagcttggagtaaagaagatgaacatttttggattatcctgtttgttaaattgttcaaacttttattatgta |
377 |
Q |
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| T |
50337641 |
cgattatttgatcaatgagtgtgggactgaacttggagtaaagaagatgaacatttttggattatcctgtttgttaaattgttcaaactttttttattta |
50337740 |
T |
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| Q |
378 |
cagatgttagtagttagttagaaccttgaatcttatgctcaaacacttttaaatgtctcaggttaactacttc |
450 |
Q |
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| T |
50337741 |
cagatgttagtagttagttagaaccttgaatcttatgctcaaacacttttaaatgtctcaggttaactacttc |
50337813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 50337299 - 50337368
Alignment:
| Q |
114 |
tctcgccttaataatttata--tacaaaaccaaacgttgtatctgagtccgtataaaatacacaataatt |
181 |
Q |
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| T |
50337299 |
tctcgccttaataatttatatatacaaaaccaaacattgtatctgagtccgtataaaatacacaataatt |
50337368 |
T |
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