View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_147 (Length: 224)

Name: NF1441_high_147
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_147
NF1441_high_147
[»] chr6 (5 HSPs)
chr6 (119-211)||(5361287-5361379)
chr6 (1-83)||(5361166-5361248)
chr6 (148-211)||(5404053-5404116)
chr6 (42-83)||(5403759-5403800)
chr6 (120-151)||(5403836-5403867)
[»] chr5 (2 HSPs)
chr5 (119-207)||(38011151-38011240)
chr5 (12-83)||(38011274-38011345)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 5361287 - 5361379
Alignment:
Q  119 ttatagattgatgaatttgttgacgcaaacttttgctacactaaaattttgctataagtagatattttccacattcgcaactttttgttcatc 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5361287 ttatagattgatgaatttgttgacgcaaacttttgttacactaaaattttgctataagtagatattttccacattcgcaactttttgttcatc 5361379  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5361166 - 5361248
Alignment:
Q  1 aataaaacacattgtcttgatttgttttctcttattttctgtctgtttgttgactttctttccaatatgactttattgttctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  5361166 aataaaacacattgtcttgatttgttttctcttattttctgcctgtttgttgactttctttccaatatgacttgattgttctt 5361248  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 5404053 - 5404116
Alignment:
Q  148 cttttgctacactaaaattttgctataagtagatattttccacattcgcaactttttgttcatc 211  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  5404053 ctttcgctacactaaaattttgctataacttgatattttccacattcacaactttttgttcatc 5404116  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 5403759 - 5403800
Alignment:
Q  42 tctgtttgttgactttctttccaatatgactttattgttctt 83  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  5403759 tctgtttgttgactttctttccaatatgacttgattgttctt 5403800  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 151
Target Start/End: Original strand, 5403836 - 5403867
Alignment:
Q  120 tatagattgatgaatttgttgacgcaaacttt 151  Q
    ||||||||||||||||||||||||||||||||    
T  5403836 tatagattgatgaatttgttgacgcaaacttt 5403867  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 38011240 - 38011151
Alignment:
Q  119 ttatagattgatgaatttgttgacgcaaacttttgctacactaaaattttgctataagtaga-tattttccacattcgcaactttttgtt 207  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||| | || ||||||||||||||  |||||||||||    
T  38011240 ttatagattgatgaatttgttgacgcaaatttttgccacactaaaattttgcggtaacttgattattttccacattcataactttttgtt 38011151  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 38011345 - 38011274
Alignment:
Q  12 ttgtcttgatttgttttctcttattttctgtctgtttgttgactttctttccaatatgactttattgttctt 83  Q
    ||||||| ||||||||||||||| ||| ||||| |||||||||||| |||  |||| ||||| |||||||||    
T  38011345 ttgtcttcatttgttttctcttactttatgtctatttgttgactttatttttaatacgacttgattgttctt 38011274  T

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