View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_15 (Length: 460)
Name: NF1441_high_15
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 20070315 - 20070631
Alignment:
| Q |
18 |
ataaggtgatcccatatgactgactttaaactgggagatttagtactccaaacagtggatgtaaaataaaatgcctaccaagggaaacttattgataatt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |
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| T |
20070315 |
ataaggggatcccatatgactgactttaaactgggagatttagtactccaaacagtggatgtaaaaaacaatgtctaccaaggggaacttattgataatt |
20070414 |
T |
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| Q |
118 |
aggaaaacccataccagatccttaatgagtacgtggacatgagcctacaaacttgaaaattttaataaggttcgcattatgaggattttgaatgccttaa |
217 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
20070415 |
aggaaaacccatacaagatc-ttaatgagtacgtggacatgagcctacaaacttgaaaaattaaataaggttcgcattatgaggattttgaatgccttaa |
20070513 |
T |
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| Q |
218 |
aat-gaagttataccacaattaaatgaccaacatacccacaatgactatagtcatttgtaagtcaactctacaagataataaatctggagttgcaaaata |
316 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20070514 |
aattgaagttataccacaattaaatcaccaacatacccacaatgactatagtcatttgtaagtcaactctacaagataataaatctggagttgcaaaata |
20070613 |
T |
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| Q |
317 |
ctaacaagtctattacta |
334 |
Q |
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|||| || ||||| |||| |
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| T |
20070614 |
ctaataattctatcacta |
20070631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 333 - 443
Target Start/End: Original strand, 20071179 - 20071289
Alignment:
| Q |
333 |
tagctccactgccattcccatttgattggtaacttgattcctttctttgaatcttgtgaaatctgtgatcatggtgtttattgatttgtacattttgtcc |
432 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
20071179 |
tagctccactctcattcccatttgattggtaacctgattcctttctttgaatcttgtgaaatccatgatcatggtgtttatcgatttgtacattttgtcc |
20071278 |
T |
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| Q |
433 |
aacctttctct |
443 |
Q |
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||| ||||||| |
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| T |
20071279 |
aacatttctct |
20071289 |
T |
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