View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_150 (Length: 218)
Name: NF1441_high_150
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_150 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 38873835 - 38874031
Alignment:
| Q |
8 |
ccaagaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
107 |
Q |
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| T |
38873835 |
ccaacaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
38873934 |
T |
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| Q |
108 |
attaattctctccttatattttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctg |
206 |
Q |
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| T |
38873935 |
attaat--tctccttattttttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctg |
38874031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 38776917 - 38776741
Alignment:
| Q |
31 |
tacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactacca---accacattaattctctccttatatt |
127 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||| || |
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| T |
38776917 |
tacacaagaggaatttaatgggaatataaaaggcgggttctcttggttgaaccgcctatgatcgaactaccaccaaccacgttaattctc--cttatttt |
38776820 |
T |
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| Q |
128 |
ttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctg |
206 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38776819 |
ttgaatctgacttaagtaccactaatgccagttgagtttcctgttcttctgtttttaccaccactggttcttttttctg |
38776741 |
T |
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