View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_154 (Length: 210)

Name: NF1441_high_154
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_154
NF1441_high_154
[»] chr1 (6 HSPs)
chr1 (2-193)||(40187957-40188149)
chr1 (8-168)||(50483947-50484107)
chr1 (2-96)||(40722152-40722246)
chr1 (26-88)||(40722712-40722774)
chr1 (53-109)||(50484052-50484108)
chr1 (26-109)||(51694169-51694253)
[»] chr3 (1 HSPs)
chr3 (2-193)||(54353378-54353569)
[»] chr4 (5 HSPs)
chr4 (2-179)||(48500797-48500975)
chr4 (11-102)||(23757622-23757712)
chr4 (32-103)||(5433072-5433143)
chr4 (31-109)||(17522251-17522329)
chr4 (59-109)||(5236573-5236623)
[»] chr8 (6 HSPs)
chr8 (36-179)||(41637340-41637484)
chr8 (2-109)||(20066422-20066529)
chr8 (2-88)||(20066926-20067012)
chr8 (2-52)||(41637273-41637323)
chr8 (2-63)||(12819811-12819872)
chr8 (6-63)||(4808052-4808107)
[»] chr5 (4 HSPs)
chr5 (2-114)||(39349915-39350027)
chr5 (113-193)||(39349966-39350047)
chr5 (11-75)||(1011185-1011249)
chr5 (49-108)||(25002194-25002252)
[»] chr6 (3 HSPs)
chr6 (3-76)||(23638769-23638842)
chr6 (2-66)||(21455478-21455542)
chr6 (6-63)||(1756602-1756659)
[»] chr7 (2 HSPs)
chr7 (26-109)||(19218649-19218733)
chr7 (1-68)||(40918040-40918107)
[»] scaffold0081 (1 HSPs)
scaffold0081 (47-109)||(42766-42829)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-68)||(54988-55055)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 40187957 - 40188149
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaa 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40187957 aattaacaccaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacgacaa 40188056  T
Q  102 actcaatttaaatcaaattcatcaacttcaactacaaattccattcatcttcaactgcaaactcaa-tcaaatctgacaatattcatatcttc 193  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  40188057 actcaatttaaatcaaattcatcaccttcaaccacaaattcaattcatcttcaactacaaactcaattcaaatatgacaatattcatatcttc 40188149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 50483947 - 50484107
Alignment:
Q  8 caccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaactcaa 107  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  50483947 caccaccaccatcatataactcacaatcaaaattcacactcatttatcaaattcatcaccttcaaccacaaatccaaatcatcttcaaccacaaactcaa 50484046  T
Q  108 tttaaatcaaattcatcaacttcaactacaaattccattcatcttcaactgcaaactcaat 168  Q
    |||||||||| ||||||| | ||||| |||||||| |||||||||||||||||||||||||    
T  50484047 tttaaatcaatttcatcaccctcaaccacaaattcaattcatcttcaactgcaaactcaat 50484107  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 40722152 - 40722246
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaac 96  Q
    |||||||||||||| | |||| | |||||||||||||||||||||||||||||||||| |||| |||||||||  |||||||||| |||||||||    
T  40722152 aattaacaccaccatcttcatctaactcacaatcaaaattaacactcatttatcaaatccatcgccttcaaccgtaaatccaatttatcttcaac 40722246  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 40722774 - 40722712
Alignment:
Q  26 actcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattca 88  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||  |||||||    
T  40722774 actcacaatcaaaattaacacccatttatcaaatccatcatcttcaaccagaaactcaattca 40722712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 50484052 - 50484108
Alignment:
Q  53 atcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaactcaatt 109  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||  |||||||||||    
T  50484052 atcaatttcatcaccctcaaccacaaattcaattcatcttcaactgcaaactcaatt 50484108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 51694253 - 51694169
Alignment:
Q  26 actcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaacaacaaactcaatt 109  Q
    ||||| |||||||| |||||  |||||||||||||||||||||| ||| | |||||  | |||||||||| | ||||||||||||    
T  51694253 actcataatcaaaactaacatccatttatcaaattcatcacctttaacgataaatcagatttcatcttcatccacaaactcaatt 51694169  T

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Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 54353378 - 54353569
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaatt-aacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaaca 100  Q
    ||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54353378 aattaacaccaccaccatcatataactca--atcaaaatttaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacgaca 54353475  T
Q  101 aactcaatttaaatcaaattcatcaacttcaactacaaattccattcatcttcaactgcaaactcaa-tcaaatctgacaatattcatatcttc 193  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  54353476 aactcaatttaaatcaaattcatcaccttcaactacaaattcaattcatcttcaactacaaactcaattcaaatctgacaatattcatatcttc 54353569  T

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Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 48500975 - 48500797
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaa 101  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  48500975 aattaacaccaccaccatcatatagctcacaatcaaaattaacacccatttatcaaattcatcatcttcaaccacaaatccaattcatcttcaaccacaa 48500876  T
Q  102 actcaatttaaatcaaattcatcaacttcaactacaaattccattcatcttcaactgcaaactcaa-tcaaatctgaca 179  Q
    |||||||||||||||||||||||| ||||||  | |||||| |||||||||||||| ||||||||| ||||||||||||    
T  48500875 actcaatttaaatcaaattcatcaccttcaatcataaattcaattcatcttcaactacaaactcaattcaaatctgaca 48500797  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 23757712 - 23757622
Alignment:
Q  11 caccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaa 102  Q
    |||||||||||| | ||||| |||||||| |||||||||||||||||| ||||||| || ||||| ||||| | |||||||||||| |||||    
T  23757712 caccaccatcatct-actcataatcaaaactaacactcatttatcaaagtcatcactttaaaccataaatctagttcatcttcaaccacaaa 23757622  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 5433143 - 5433072
Alignment:
Q  32 aatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaac 103  Q
    |||||||| |||||||||||||||||| ||||||| || ||||| ||||  | |||||||||||| ||||||    
T  5433143 aatcaaaactaacactcatttatcaaagtcatcactttaaaccataaatttagttcatcttcaaccacaaac 5433072  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 17522329 - 17522251
Alignment:
Q  31 caatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaactcaatt 109  Q
    ||||||||| |||||  ||||||||||||   ||||||| ||||| ||||| | |||||||||||| ||||||||||||    
T  17522329 caatcaaaactaacatacatttatcaaatctttcacctttaaccataaatctagttcatcttcaaccacaaactcaatt 17522251  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 5236573 - 5236623
Alignment:
Q  59 ttcatcaccttcaaccacaaatccaattcatcttcaacaacaaactcaatt 109  Q
    ||||||||||||||| ||||||||||||||  || ||| ||||||||||||    
T  5236573 ttcatcaccttcaacaacaaatccaattcacatttaaccacaaactcaatt 5236623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 41637340 - 41637484
Alignment:
Q  36 aaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaactcaatttaaatcaaattcatcaacttcaacta 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  41637340 aaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaaccacaaactcaatttaaatcaaattcatcaccctcaacca 41637439  T
Q  136 caaattccattcatcttcaactgcaaactcaa-tcaaatctgaca 179  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||    
T  41637440 caaattcaattcatcttcaactacaaactcaattcaaatctgaca 41637484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 20066422 - 20066529
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaa 101  Q
    |||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||  ||| |||||||| | |||||||||| ||||||||| | ||    
T  20066422 aattaacaccaccatcttcatctaactcacaatcaaaattaacactcatttatcaaatcaatcgccttcaactataaatccaatttatcttcaaccataa 20066521  T
Q  102 actcaatt 109  Q
    ||||||||    
T  20066522 actcaatt 20066529  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 20067012 - 20066926
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattca 88  Q
    ||||||||| ||||||||||  | |||||||||||||||||||||  ||||||||||| ||||| |||||||||||||  |||||||    
T  20067012 aattaacacaaccaccatcaactaactcacaatcaaaattaacacctatttatcaaatccatcatcttcaaccacaaactcaattca 20066926  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 41637273 - 41637323
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcattt 52  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  41637273 aattaacaccgccaccaacatataactcacaatcaaaattaacactcattt 41637323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 12819872 - 12819811
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcat 63  Q
    ||||||||  ||||||||||| | |||||||||||||| |||||| ||||||||||||||||    
T  12819872 aattaacataaccaccatcatcttactcacaatcaaaactaacacccatttatcaaattcat 12819811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 4808052 - 4808107
Alignment:
Q  6 aacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcat 63  Q
    ||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||    
T  4808052 aacaccaccaccatcatct-actcacaatcaaaatcaa-actcatttatcaaattcat 4808107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 39349915 - 39350027
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaa 101  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  39349915 aattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaattcaattcatcttcaactacaa 39350014  T
Q  102 actcaatttaaat 114  Q
    |||||||| ||||    
T  39350015 actcaattcaaat 39350027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 39349966 - 39350047
Alignment:
Q  113 atcaaattcatcaacttcaactacaaattccattcatcttcaactgcaaactcaa-tcaaatctgacaatattcatatcttc 193  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  39349966 atcaaattcatcaccttcaaccacaaattcaattcatcttcaactacaaactcaattcaaatatgacaatattcatatcttc 39350047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 1011185 - 1011249
Alignment:
Q  11 caccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaacca 75  Q
    |||||| ||||| | |||||||||||||| |||||   ||||||||||||||||||||| |||||    
T  1011185 caccactatcatctaactcacaatcaaaactaacatcaatttatcaaattcatcacctttaacca 1011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 25002194 - 25002252
Alignment:
Q  49 atttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacaacaaactcaat 108  Q
    ||||||| ||| ||||||||||||| |||||| || |||||||||||| |||||||||||    
T  25002194 atttatccaatccatcaccttcaacaacaaattca-ttcatcttcaaccacaaactcaat 25002252  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 23638769 - 23638842
Alignment:
Q  3 attaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccac 76  Q
    |||||| ||||||||||||| | | ||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  23638769 attaactccaccaccatcatctaattcataatcaaaactaacactcatttgtcaaattcatcaccttcaaccac 23638842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 21455478 - 21455542
Alignment:
Q  2 aattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcac 66  Q
    ||||||||||||||||||||| | ||||| ||| |||| |||||| ||| |||||||||||||||    
T  21455478 aattaacaccaccaccatcatctaactcaaaattaaaactaacacccatgtatcaaattcatcac 21455542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 1756602 - 1756659
Alignment:
Q  6 aacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcat 63  Q
    |||| |||||||||||| | |||||||||||||| |||||| ||||||| ||||||||    
T  1756602 aacatcaccaccatcatctaactcacaatcaaaactaacacccatttattaaattcat 1756659  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 19218733 - 19218649
Alignment:
Q  26 actcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaacaacaaactcaatt 109  Q
    ||||| |||||||| |||||  |||||||||||||||||||||| ||||| |||||  | |||||||||| | ||||||||||||    
T  19218733 actcataatcaaaactaacatccatttatcaaattcatcacctttaaccataaatcagatttcatcttcatccacaaactcaatt 19218649  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40918107 - 40918040
Alignment:
Q  1 taattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcacct 68  Q
    ||||||||| || ||  ||||| | ||||| |||||||| |||||||||||||||||||| |||||||    
T  40918107 taattaacaacatcagtatcatttaactcataatcaaaactaacactcatttatcaaatttatcacct 40918040  T

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Target: scaffold0081 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 42829 - 42766
Alignment:
Q  47 tcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaacaacaaactcaatt 109  Q
    ||||||||||||||||||||||| ||||| |||||    |||||||||||| ||||||||||||    
T  42829 tcatttatcaaattcatcacctttaaccataaatcaggtttcatcttcaaccacaaactcaatt 42766  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 54988 - 55055
Alignment:
Q  1 taattaacaccaccaccatcatatgactcacaatcaaaattaacactcatttatcaaattcatcacct 68  Q
    ||||||||| || ||  ||||| | ||||| |||||||| |||||||||||||||||||| |||||||    
T  54988 taattaacaacatcagtatcatttaactcataatcaaaactaacactcatttatcaaatttatcacct 55055  T

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