View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_18 (Length: 442)
Name: NF1441_high_18
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 47832935 - 47832515
Alignment:
| Q |
6 |
agcagcagagaatactcgtatactgaaggnnnnnnngtagcagtgtcaatagttagtaaaatcacagaatgtactgtaaaattcattttcacttagttan |
105 |
Q |
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| T |
47832935 |
agcaacagaaaatactcgtatactgaaggaaaaaaagtagcagtatcaatagttagtaaaatcacagaatgtactgtaaaattcattttcacttggttat |
47832836 |
T |
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| Q |
106 |
nnnnnn-atttgatgtgctattaaatttgtgattaaaattgggtttaatttctatagtaaccatggtactgaaagcatatatataaatctcatacaagta |
204 |
Q |
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| T |
47832835 |
tttttttatttgatgtgctattaaatttgtgattaaaattgggtttaatttctatagtaaccatggtactgaaagcatatatataaatctcatacaagta |
47832736 |
T |
|
| Q |
205 |
aataagtaagttagacaaatctgtcatactaaaatgaaaagatgataaaactccctaaaagatacaacacacttgggtttaacatcacctagaagctatt |
304 |
Q |
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| T |
47832735 |
aataagtaagttagacaaatctgtcatactaaaatgaaaagatgataaaactccctaaaagatacaacacatttgggtttaacatcacctagaagctatt |
47832636 |
T |
|
| Q |
305 |
ttagatacttgatgagttatatgcttcacttctaattatctaagcacaaattcatcggtctcaattccaattattaatgaacaaattgttgtataagaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47832635 |
ttagatacttgatgagttatatgcttcacttctaattatctaagcacaaattcatcggtctcaattccaattattaatgaacaaattgttgtataagaaa |
47832536 |
T |
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| Q |
405 |
atgatctattgtacatgtggt |
425 |
Q |
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| T |
47832535 |
atgatctcttgtacatgtggt |
47832515 |
T |
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