View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_high_19 (Length: 411)
Name: NF1441_high_19
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 34879742 - 34879341
Alignment:
| Q |
1 |
ttataattagtgaaatatgttgttaaaaaataaaattagaaatattatcatatatagaattgttccacaagaaaaacaaaattgaggggaagctaagtac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879742 |
ttataattggtgaaatatgttgttaaaaaataaaattagaaatattatcatatatagaattgttccacaagaaaaacaaaattgaggggaagctaagtac |
34879643 |
T |
|
| Q |
101 |
ctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatcatcctttaaaatacaaaacaaaatttccaatgcat- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879642 |
ctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatcatcctttaaaatacaaaacaaaatttccaatgcata |
34879543 |
T |
|
| Q |
200 |
------cnnnnnnnncactactagagacaaataaaataaattcagaaaccatttcaaaagaaaaccttactttatctttctcaagttgttccttaagaga |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879542 |
aaaaaaaaaaaaaaaaactactagagacaaataaaataaattcagaaaccatttcaaaagaaaaccttactttatctttctcaagttgttccttaagaga |
34879443 |
T |
|
| Q |
294 |
aaactgagggccaagatccaattccaacttgggttcttcctcttcatcttcatctggcacaatttcctcagcttcatcatagttgacaccaaccttgttg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879442 |
aaactgagggccaagatccaattccaacttgggttcttcctcttcatcttcatctggcacaatttcctcagcttcatcatagttgacaccaaccttgttg |
34879343 |
T |
|
| Q |
394 |
gt |
395 |
Q |
| |
|
|| |
|
|
| T |
34879342 |
gt |
34879341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 38371605 - 38371681
Alignment:
| Q |
95 |
aagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatcatccttt |
171 |
Q |
| |
|
||||||||||||||||||| | ||||||| | || ||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
38371605 |
aagtacctccaacagcagatatatcaacactacccagaagttgctctttccattttctcaaactttcatcatccttt |
38371681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 38371772 - 38371827
Alignment:
| Q |
262 |
actttatctttctcaagttgttccttaagagaaaactgagggccaagatccaattc |
317 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||| ||||| |||||||||||||| |
|
|
| T |
38371772 |
actttatctttctcaagctgttccttgagggtaaattgaggaccaagatccaattc |
38371827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University