View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_high_21 (Length: 411)
Name: NF1441_high_21
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Complemental strand, 1888493 - 1888094
Alignment:
| Q |
10 |
attatactatagaaagaaatgcacaaattaatgattatcaacaaccatatcattaa-------------aaattagcaagaacaatgccaagaatccaat |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
1888493 |
attatactatagaaagaaatgcacaaattaatgattctcaacaaccatgtcattaagttggaacaataaaaattagcaagaacaatgccaagaatccaat |
1888394 |
T |
|
| Q |
97 |
tcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgat |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1888393 |
tcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgat |
1888294 |
T |
|
| Q |
197 |
gttacatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaattccctataaaaattaaataaatgtatata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1888293 |
gttacatagacagctccctttaaacgcattgaccatgcataaactatattccctattaattttcccaaaattccctataaaaattaaataaatgtatata |
1888194 |
T |
|
| Q |
297 |
aataagaggtgtaaaattttttgtcgtagtgaagcaatatggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt |
396 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1888193 |
aataagaggtgtaaaatcttttgtcgtagtgaagcaatatggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt |
1888094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 100 - 396
Target Start/End: Complemental strand, 1881090 - 1880798
Alignment:
| Q |
100 |
aaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgtt |
199 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1881090 |
aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt |
1880991 |
T |
|
| Q |
200 |
acatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaattccctataaaaattaaataaatgtatataaat |
299 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| ||| | | |||||||||||| ||||| ||||| || | |||||||| | || | |
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|
| T |
1880990 |
acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaa-----atataaatgtgtcaaatt |
1880896 |
T |
|
| Q |
300 |
aagaggtgtaaaattttttgtcgtagtgaagcaata-tggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt |
396 |
Q |
| |
|
||||| |||||| || |||| ||| ||||||| | ||| || |||||||||| |||||||| || |||||||||||||||||||||||||||| |
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|
| T |
1880895 |
aagagctgtaaatttatttggtcaagtacagcaatagtactttcaagtgtatcttacagaagaaactatagagatgagtgagagatttagtcctattt |
1880798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 1898969 - 1898833
Alignment:
| Q |
83 |
gccaagaatccaattcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttgga |
182 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||| || |||||||||||||||| | |
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|
| T |
1898969 |
gccaagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaa |
1898870 |
T |
|
| Q |
183 |
gtggcttgaatgatgttacatagacagctccctttaa |
219 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||| |
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|
| T |
1898869 |
gtggcttgaatgaggttacatagactgccccctttaa |
1898833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 1904158 - 1903989
Alignment:
| Q |
99 |
aaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgt |
198 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| || |
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|
| T |
1904158 |
aaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggt |
1904059 |
T |
|
| Q |
199 |
tacatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaatt |
268 |
Q |
| |
|
||||||||| || |||||||| || | ||||| ||| |||| |||| ||||| || ||||| |||||| |
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|
| T |
1904058 |
tacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaatt |
1903989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 1908391 - 1908222
Alignment:
| Q |
99 |
aaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgt |
198 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| || |
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|
| T |
1908391 |
aaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggt |
1908292 |
T |
|
| Q |
199 |
tacatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaatt |
268 |
Q |
| |
|
||||||||| || |||||||| || | ||||| ||| |||| |||| ||||| || ||||| |||||| |
|
|
| T |
1908291 |
tacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaatt |
1908222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 1914270 - 1914098
Alignment:
| Q |
100 |
aaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgtt |
199 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||||| |||||||||||||| ||| |
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|
| T |
1914270 |
aaaattgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggtt |
1914171 |
T |
|
| Q |
200 |
acatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaattccct |
272 |
Q |
| |
|
||||||||||| |||||||| | |||| ||| ||| |||| || || || ||||| || || |||||||||| |
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|
| T |
1914170 |
acatagacagccccctttaagtgtattgcccaggcagaaactatgttaccgattaacttcccgaaaattccct |
1914098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 1893239 - 1893124
Alignment:
| Q |
101 |
aaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgtta |
200 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
1893239 |
aaattaaattaaccataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtta |
1893140 |
T |
|
| Q |
201 |
catagacagctccctt |
216 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
1893139 |
catagacagccccctt |
1893124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 1892991 - 1892942
Alignment:
| Q |
347 |
gtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt |
396 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1892991 |
gtatcttacagaagaaacaatggagatgagtgagagatttagtcctattt |
1892942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 1913696 - 1913647
Alignment:
| Q |
346 |
tgtatcttacggaagaaacaatggagatgagtgagagatttagtcctatt |
395 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1913696 |
tgtatcttacagaagaaacaatggagataagtgagagatttagtcctatt |
1913647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 1881414 - 1881369
Alignment:
| Q |
63 |
taaaaattagcaagaacaatgccaagaatccaattcaaaaattgaa |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
1881414 |
taaaaattagcaagaacaatgccaaaaatccaattcaaatattgaa |
1881369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 1898320 - 1898271
Alignment:
| Q |
347 |
gtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt |
396 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
1898320 |
gtatcttacagaagaaacaatggagataagtgagagattcagtcctattt |
1898271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 1881474 - 1881428
Alignment:
| Q |
19 |
tagaaagaaatgcacaaattaatgattatcaacaaccatatcattaa |
65 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1881474 |
tagaaagaaatacacaaattaatgattgtcaacaaccatatgattaa |
1881428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 1919239 - 1919119
Alignment:
| Q |
117 |
accttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgttacatagacagctccctt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | || || || ||||||| |||||||||| ||||||||||| |||| |||| |||| ||||| |
|
|
| T |
1919239 |
accttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaacattgttgcatatacaggaccctt |
1919140 |
T |
|
| Q |
217 |
taaacgcattgaccatgcata |
237 |
Q |
| |
|
|||| | |||| ||| ||||| |
|
|
| T |
1919139 |
taaatgtattgcccaagcata |
1919119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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