View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_24 (Length: 390)
Name: NF1441_high_24
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_24 |
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| [»] scaffold0181 (1 HSPs) |
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| [»] scaffold0171 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 24940157 - 24939797
Alignment:
| Q |
13 |
aatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24940157 |
aatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattttgtcaaacc |
24940058 |
T |
|
| Q |
113 |
tgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24940057 |
tgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccgacacattaaacttccctgcaagctcggc |
24939958 |
T |
|
| Q |
213 |
agtgtctttcaccatcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggtt |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24939957 |
agtgtctgtcaccatcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggat |
24939858 |
T |
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| Q |
313 |
agagtcaacagctcgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaa |
373 |
Q |
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| T |
24939857 |
agagtcaacagctcgccgccaatatcaacggcttcaccggcttcccctttcttatccaaaa |
24939797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 25168773 - 25168416
Alignment:
| Q |
16 |
atatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgt |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||| | |
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| T |
25168773 |
atatcaagtaaatccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacctat |
25168674 |
T |
|
| Q |
116 |
ccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagt |
215 |
Q |
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||| ||| ||||| ||| |||||||||||||||||||||| | ||||||| ||||||| |||||||| |||||||| | ||||||| ||||||| || || |
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| T |
25168673 |
cccgaatccttttcagctttttattcattccataaaaatctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaagctctgcggt |
25168574 |
T |
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| Q |
216 |
gtctttcaccatcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggttaga |
315 |
Q |
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||| |||||||||||| ||| || ||||| || | ||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||| ||| |
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| T |
25168573 |
ctctgtcaccatcttcctaatctctttaacatcgctaatatcattctcagaaccgaaagtttttttcattgtcattattgttataatgctattggtgaga |
25168474 |
T |
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| Q |
316 |
gtcaacagctcgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaa |
373 |
Q |
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||||| |||||||| ||||| |||| ||||||||||| |||||||||||| ||||||| |
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| T |
25168473 |
gtcaatagctcgcccccaacttcaatggcttcaccggtttcccctttcttctgcaaaa |
25168416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 38808873 - 38808935
Alignment:
| Q |
272 |
aagtttttctcattgtcatccttgttataatgctattggttagagtcaacagctcgccgccaa |
334 |
Q |
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| T |
38808873 |
aagttttactcattgtcatccttgttatgattctattggtgtgaatcaagagctcgccaccaa |
38808935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 373
Target Start/End: Original strand, 11224 - 11465
Alignment:
| Q |
126 |
tttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttcacc |
225 |
Q |
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|||||||||||||| ||||| | |||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||| | |||| |||| | |
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| T |
11224 |
tttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaagctctaaaatgtccttcagc |
11323 |
T |
|
| Q |
226 |
atcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggttagagtcaacagct |
325 |
Q |
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|||| || ||| || | |||||||| ||||||| | ||||| | ||||| || |||| ||| |||| ||||||| ||||||| ||||| || |||| |
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| T |
11324 |
atctccctaatttcttcaacttcac---tatcattttcagaac---atgttttacttattgccattcttgctataatgttattggtgagagttaagagct |
11417 |
T |
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| Q |
326 |
cgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaa |
373 |
Q |
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||||||| ||||||||||| | || ||||| ||| |||| ||||||| |
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| T |
11418 |
cgccgccgacatcaacggcgttgccagcttctcctatcttctgcaaaa |
11465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 19151 - 18967
Alignment:
| Q |
55 |
cttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaattcttttaagccttttattcattccataaaaat |
154 |
Q |
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||||||||| ||||| || ||||||| || |||| |||||||||| |||||||||||| ||| ||| |||||||||||| || | ||| | | || |
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| T |
19151 |
cttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgtcaaacctctccataaccactttaagccttttgttaaatccttgcatat |
19052 |
T |
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| Q |
155 |
ccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttcaccatcttccgaatgtc |
239 |
Q |
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|| |||||||| |||||||||||||||| |||| ||||||| |||||| |||||| || | |||| ||||||||||| |||||| |
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| T |
19051 |
cccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtc |
18967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 24561 - 24409
Alignment:
| Q |
54 |
tcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaat-tcttttaagccttttattcattccataaaa |
152 |
Q |
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|||||||||| |||||||| ||||||| || | || ||||| ||||||||||| ||| ||| | ||| ||||||| ||||||| || | ||| | || |
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| T |
24561 |
tcttttcttcatttcctcttgatgctcccttatgacactctcaatcattgtgtcgaacatgttcataagctctttta-gccttttgttaaatccttgcaa |
24463 |
T |
|
| Q |
153 |
atccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
206 |
Q |
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|||| |||||||| |||||||||||||||| |||| |||||||| |||| |||| |
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| T |
24462 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaactgccctccaag |
24409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 10801 - 10701
Alignment:
| Q |
270 |
aaaagtttttctcattgtcatccttgttataatgctattggttagagtcaacagctcgccgccaacatcaacggcttcaccggcttcccctttcttatgc |
369 |
Q |
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||||||||| ||||| |||||||||||||| || ||||| || ||| |||| ||| ||| | |||||||| ||||| ||||||||||||||||| ||| |
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| T |
10801 |
aaaagttttactcatggtcatccttgttatgattctattcgtgagattcaagagcaagccactgacatcaacagcttcgccggcttcccctttcttctgc |
10702 |
T |
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| Q |
370 |
a |
370 |
Q |
| |
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| |
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| T |
10701 |
a |
10701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 10909 - 10859
Alignment:
| Q |
156 |
caaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
206 |
Q |
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|||||||||||||||||||||| | ||| ||| | |||||||||||||||| |
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| T |
10909 |
caaattcttacaaaaccaaatatattctaacatactaaacttccctgcaag |
10859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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