View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_high_28 (Length: 378)
Name: NF1441_high_28
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 7708168 - 7708315
Alignment:
| Q |
217 |
acaaattgaaaagggttgtttccgatacaaaatttttactttttacattcttatcaaatttaattagagcacttgttacataatcctaatttataacgca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
7708168 |
acaaattgaaaagggttgtttccgatacaaaatttctactttttacattcttatcaaatttaattagagcacttgttacataatcctaatttacattgca |
7708267 |
T |
|
| Q |
317 |
atacaaacttatctccatttgtgatgtgaaaattataataaataaaga |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7708268 |
atacaaacttatctccatttgtgatgtgaaaaatataataaataaaga |
7708315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 7707582 - 7707655
Alignment:
| Q |
14 |
agagcaaagttctctctgtctcatgcacctgggcaacatgagacacacacgaggcgtgtggcctcaacctctcg |
87 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7707582 |
agagcaaaattctctctgtcccatgcacctgggcaacatgagacacacacgaggcgtgtggcctcaacctctcg |
7707655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 7707703 - 7707745
Alignment:
| Q |
130 |
aatgtgatctcggaattttgggactgaattcccccaacttgta |
172 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
7707703 |
aatgtgatcttggaattttggaactgaattcccccaacttgta |
7707745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University