View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_29 (Length: 377)
Name: NF1441_high_29
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 35473625 - 35473978
Alignment:
| Q |
12 |
atgaagatgcaatatctaactttggttctgaccttatcaatgattgcttcattgataataatattaaccaatttctttcaattcctccaaacccattatt |
111 |
Q |
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| T |
35473625 |
atgaagatgcaatatctaactttggttctgaccttatcaatgattgcttcattgataataatattaaccaacttctttcaattcctccaaatccattatt |
35473724 |
T |
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| Q |
112 |
tgatcacaacaacaatattattaataataatgttgttaatgagtataatccaagccctacaacaattggctccttctcttgttatgatggagtgattaaa |
211 |
Q |
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| T |
35473725 |
tgatcacaacaacaatattattaataataatgttgttaatgagtataatccaagccctacaacaattggctccttctcttgttatgatggagtgattaaa |
35473824 |
T |
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| Q |
212 |
ggagaaggagaaaatgatggaggtggttcttctg---caacgacgacgacgacaaccacgatcgatgatgccaaccctagggctaaaactgataggtcca |
308 |
Q |
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| T |
35473825 |
ggagaaggagaaaatgatggaggtggttcttctgcaacaacaacgacaacgacaaccacgatcgatgatgccaaccctagggctaaaactgataggtcca |
35473924 |
T |
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| Q |
309 |
agactctcatttctgagagaaggaggagaggcaggatgaaggataagctttatg |
362 |
Q |
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| T |
35473925 |
agactctcatttctgagagaaggaggagaggcaggatgaaggataagctttatg |
35473978 |
T |
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