View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_30 (Length: 376)
Name: NF1441_high_30
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 50087633 - 50087276
Alignment:
| Q |
1 |
agcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087633 |
agcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagtt |
50087534 |
T |
|
| Q |
101 |
ggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087533 |
ggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaat |
50087434 |
T |
|
| Q |
201 |
tactttttctaatcacactcattggtagaaaaatctttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgtataca |
300 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087433 |
tactttttctcatcacactcattggtagaaaaatatttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgtataca |
50087334 |
T |
|
| Q |
301 |
tgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087333 |
tgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaa |
50087276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 15239433 - 15239491
Alignment:
| Q |
251 |
aaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtgg |
309 |
Q |
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| T |
15239433 |
aaaccatacattcctgattttaaattagcttttgagcatttttgtattcatgctggtgg |
15239491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 34053144 - 34053190
Alignment:
| Q |
263 |
cctgattttaaacaagcttttgaacatttttgtatacatgctggtgg |
309 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
34053144 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtgg |
34053190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 23271894 - 23271537
Alignment:
| Q |
1 |
agcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagtt |
100 |
Q |
| |
|
||||||||| ||||| | || ||||||||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| ||||||||||||| |
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| T |
23271894 |
agcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaagtt |
23271795 |
T |
|
| Q |
101 |
ggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaat |
200 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||| |||||| | ||||||||||||||||| || |||||||||||| |||| ||||||||||||| |
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| T |
23271794 |
ggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaacaat |
23271695 |
T |
|
| Q |
201 |
tactttttctaatcacactcattggtagaaaaatctttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgtataca |
300 |
Q |
| |
|
|||| ||||| ||||||||||||| | |||||||| ||||||||| ||| || ||||| |||||||| |||||||| ||||| ||||||||||| || |
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| T |
23271694 |
tactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtattca |
23271595 |
T |
|
| Q |
301 |
tgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaa |
358 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
23271594 |
tgctggtggacgtgccgtgatcgatgagttacagaagaatcttcagctatctgctgaa |
23271537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 26453321 - 26453392
Alignment:
| Q |
257 |
tatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtggtcgtgctgtgattgatgag |
328 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||||||||||| | ||||||||||||||| |
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| T |
26453321 |
tatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgag |
26453392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 26453081 - 26453149
Alignment:
| Q |
17 |
gttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagac |
85 |
Q |
| |
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||||||||||| || || |||||||| | |||||||||||||| ||| ||||||| | ||||| ||||| |
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| T |
26453081 |
gttcatgttgtgaggactcataaaggtgctgatgataaagcatttaagtgtgtttatcaagaacaagac |
26453149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 33446775 - 33446615
Alignment:
| Q |
65 |
tgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttc-aaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataaca |
163 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||| ||| | | ||||||||||||| | ||| |||||| | ||||||||||||| | |
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| T |
33446775 |
tgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggcaatagtaggagaagcattgaaatcaaatataata |
33446676 |
T |
|
| Q |
164 |
acaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattg |
224 |
Q |
| |
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|| || || | ||||||| | || | |||| ||||||| || ||||| ||||||| |||| |
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| T |
33446675 |
actattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattg |
33446615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 49041372 - 49041276
Alignment:
| Q |
250 |
gaaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaa |
346 |
Q |
| |
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|||||| |||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||| | ||||| |||||||||| || |||||||||||| |
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| T |
49041372 |
gaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaa |
49041276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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