View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_33 (Length: 369)
Name: NF1441_high_33
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 13699859 - 13700197
Alignment:
| Q |
21 |
aatcgaacatcataccttaaggaggagtaaactcccaggtcccaagccaacacaaccaaccaacctaagtcatatgcatttggtgtactcataaagttca |
120 |
Q |
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||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13699859 |
aatcgaatatcataccttaaggatgagtaaactcctaagtcccaagccaacacaaccaaccaacctaagtcatatgcatttggtgtactcataaagttca |
13699958 |
T |
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| Q |
121 |
aagatcttgttaaaaaagagtcaagatgtaaaactcagtgtcgcataactaatagtggtggtgaattcagttatatattctttaatgaattttggagctt |
220 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13699959 |
aagatcttgttaaaaaagagtcaagatgtcaaactcagtgtcgcataactaatagtggtggtgaattcagttatatattctttaatgaattttggagctt |
13700058 |
T |
|
| Q |
221 |
gcatggtttaaaagacaacttaatctccatgtttgaatggaatctcaaaattaaagaagaaaacaatgatgaacatggtgagaagcatgttctctggtag |
320 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13700059 |
gcatggtttaaaagaaaacttaatctccatgtttgaatggaatctcaaaattaaagaagaaaacaatgatgaacatagtgagaagcatgttctctggtag |
13700158 |
T |
|
| Q |
321 |
agatgtaccaaagagattctggtatgaagctagtctgtg |
359 |
Q |
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| T |
13700159 |
agatgtaccaaagagattctagtatgaagctagtctgtg |
13700197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 17389916 - 17390187
Alignment:
| Q |
87 |
aagtcatatgcatttggtgtactcataaagttcaaagatcttgttaaaaaagagtcaagatgtaaaactcagtgtcgcataactaatagtggtggtgaat |
186 |
Q |
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| T |
17389916 |
aagtcctatgcatttggtgtactcataaggttcaaagatcttgttcaaaaagaatcaagatgtcaaactcagtgtcgcataactaacagtggtggcgaat |
17390015 |
T |
|
| Q |
187 |
tcagttatatattctttaatgaattttggagcttgcatggtttaaaagacaacttaatctccatgtttgaatggaatctcaaaattaaagaagaaaacaa |
286 |
Q |
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||| |||||| |||||||||||||||| | ||||||||||||||||||| |||||| || |||| | ||||||||||||||||| |||||||||||||| |
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| T |
17390016 |
tcacttatattgtctttaatgaattttgaa-cttgcatggtttaaaagaccacttaaacttcatggtagaatggaatctcaaaatgaaagaagaaaacaa |
17390114 |
T |
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| Q |
287 |
tgatgaacatggtgagaagcatgttctctggtagagatgtaccaaagagattctggtatgaagctagtctgtg |
359 |
Q |
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| T |
17390115 |
tgaagaacatggtgagaagcatgttctctagtagagatgtaccaaagagtttctggtatgaagcaagtttgtg |
17390187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 30442563 - 30442514
Alignment:
| Q |
21 |
aatcgaacatcataccttaaggaggagtaaactcccaggtcccaagccaa |
70 |
Q |
| |
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|||||||| ||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
30442563 |
aatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagccaa |
30442514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7721444 - 7721395
Alignment:
| Q |
21 |
aatcgaacatcataccttaaggaggagtaaactcccaggtcccaagccaa |
70 |
Q |
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|||||||||| | ||||| |||||||||| ||||||||||||||| |||| |
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| T |
7721444 |
aatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaa |
7721395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 10526885 - 10526849
Alignment:
| Q |
34 |
accttaaggaggagtaaactcccaggtcccaagccaa |
70 |
Q |
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||||| |||||||| |||||||||||||||||||||| |
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| T |
10526885 |
accttgaggaggagcaaactcccaggtcccaagccaa |
10526849 |
T |
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