View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_37 (Length: 359)
Name: NF1441_high_37
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 15770020 - 15770147
Alignment:
| Q |
18 |
catgatcgtcgtgcgtagatgaagtcgtttccagtgaaacccatgagagaatttccatggtcgcaattgctacttgctcaacttcttgaacgaccaactt |
117 |
Q |
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| T |
15770020 |
catgatcgtcgtgcgtagatgaagtcgtttccagtgaaacccatgagagaatttccatggtcgcaattgctccttgctcaacttcttgaacgaccaactt |
15770119 |
T |
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| Q |
118 |
gtcttcatcatatgataacttgaacttg |
145 |
Q |
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| T |
15770120 |
gtcttcatcatatgataacttgaacttg |
15770147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 177 - 330
Target Start/End: Original strand, 15770148 - 15770299
Alignment:
| Q |
177 |
gtctcactatttatcttggttatatcgtttaattttctatgtaacaaatatagttaatatgcacatatagaaaggagtgtgaggagcatttatatatatg |
276 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
15770148 |
gtctcactatttatcttggttgtatcgtttaattttttatgtaacaaatatagttaatatgcacatatagaaaggagtgagag--acatgtatatatatg |
15770245 |
T |
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| Q |
277 |
cagaaaaggaatatatatattatgtgccttggacgcttcaatggtaagagtatt |
330 |
Q |
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| T |
15770246 |
cagaaaaggaatatatatattatgtgccttggacgcttcaatggtaagagtatt |
15770299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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